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BaseInfo

ncRNA ID novel_zma_miR3775
Species Zea mays
Class miRNA
Genome position Chr9:63602153-63602292 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 117 - AAAACCGCUAGUGGAAAUAUCAUU - 140
Stem-loop(if miRNA) -UCGCC               --    -CU        C    A    A A                 U G
      AUUUCUACUAGCGGU  UAUU   AGAACCGC AGUG AAAU U AUUUCCACUGGCGGUUU C U
      |||||||||||||||  ||||   |||||||| |||| |||| | ||||||||||||||||| |
      UAAAGGUGAUCGCCA  AUAA   UUUUGGCG UCAC UUUA G UAAAGGUGACCGCCAAA G A
UUACUA               AA    UUC        A    A    C A                 C A
Stem-loop sequence UCGCCAUUUCUACUAGCGGUUAUUCUAGAACCGCCAGUGAAAAUAUAAUUUCCACUGGCGGUUUUCGUAAGCAAACCGCCAGUGGAAAUAGCAUUUACACUAGCGGUUUUCUUAAUAAAACCGCUAGUGGAAAUAUCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU950653.1
ncRNA:24   UUACUAUAAAGGUGAUCGCCAAAA   1
  ||||*|||||=||||=||||||||
targets:4   AAUGCUAUUUUCACUGGCGGUUUU   27

2.5 Zea mays clone 506422 mRNA sequence NA coding protein psRNATarget
EU950653.1
ncRNA:24   UUACUAUAAAGGUGAUCGCCAAAA   1
  ||||*||||||||||=|||||||*
targets:49   AAUGCUAUUUCCACUGGCGGUUUG   72

2.5 Zea mays clone 506422 mRNA sequence NA coding protein psRNATarget