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BaseInfo

ncRNA ID	novel_zma_miR3769
Species	Zea mays
Class	miRNA
Genome position	Chr3:126032167-126032214 [-]
Reference genome	RefGen_v4
Source	SRR2287031
Length	23
Mature sequence(if miRNA)	1 - GGCCGGACGGUCCACGACCUGGA - 23
Stem-loop(if miRNA)	--    -  C    G    GA       CAGG CG GGAC GUCC  GGCCA   |||| || |||| ||||  ||||G   GUCC GC CCUG CAGG  CCGGG AG    A  A    G    --
Stem-loop sequence	CAGGCGCGGACGGUCCGAGGCCAGGGGCCGGACGGUCCACGACCUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241898.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|||||||||||||||||||*|| targets:13   GCCAGGUCGUGGACCGUCCGACC   35 Target Full Sequence	1.5	Sequence 7893 from Patent EP2985353	NA	coding protein	psRNATarget
HI409768.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|||||||||||||||||||*|| targets:13   GCCAGGUCGUGGACCGUCCGACC   35 Target Full Sequence	1.5	Sequence 7893 from Patent EP2074227	NA	coding protein	psRNATarget
JB170229.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|||||||||||||||||||*|| targets:13   GCCAGGUCGUGGACCGUCCGACC   35 Target Full Sequence	1.5	Sequence 7893 from Patent EP2559767	NA	coding protein	psRNATarget
EZ096610.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *=|||||||*||||||||||||| targets:63   GUCAGGUCGCGGACCGUCCGGCC   85 Target Full Sequence	1.0	TSA: Zea mays contig32265, mRNA sequence	NA	coding protein	psRNATarget
EZ073491.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *||||||||*||||=|||||||| targets:68   GCCAGGUCGCGGACUGUCCGGCC   90 Target Full Sequence	2.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|||||*||*||||||||||||| targets:1193   CCCAGGGCGCGGACCGUCCGGCC   1215 Target Full Sequence	2.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|||||*||*||||||||||||| targets:1242   ACCAGGCCGCGGACCGUCCGGCC   1264 Target Full Sequence	2.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|||||*||*||||||||||||| targets:1193   CCCAGGGCGCGGACCGUCCGGCC   1215 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088349.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|||||*||*||||||||||||| targets:1242   ACCAGGCCGCGGACCGUCCGGCC   1264 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|||||*||*||||||||||||| targets:2636   CCCAGGGCGCGGACCGUCCGGCC   2658 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|||||*||*||||||||||||| targets:2685   ACCAGGCCGCGGACCGUCCGGCC   2707 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EZ067064.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   *|=|||*||*||||||||||||| targets:2   ACUAGGCCGCGGACCGUCCGGCC   24 Target Full Sequence	2.0	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget
EZ059430.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   |||=|**||*||||||||||||| targets:57   UCCGGACCGCGGACCGUCCGGCC   79 Target Full Sequence	3.0	TSA: Zea mays contig60552, mRNA sequence	NA	coding protein	psRNATarget
EU940813.1	ncRNA:23   AGGUCCAGCACCUGGCAGGCCGG   1   |||=|**||*||||||||||||| targets:70   UCCGGACCGCGGACCGUCCGGCC   92 Target Full Sequence	3.0	Zea mays clone 1145688 mRNA sequence	NA	coding protein	psRNATarget