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BaseInfo

ncRNA ID	novel_zma_miR3768
Species	Zea mays
Class	miRNA
Genome position	Chr3:130503150-130503307 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2089703
Length	24
Mature sequence(if miRNA)	1 - AUGCUCUGGAUAAUUUGAUUGCAC - 24
Stem-loop(if miRNA)	--         CG   UG UA                    AUG   GUUAUUUUAUAUUUAAGCCCUUCCACCUAAAA   GCAAUCAAG  AUC  G  CAUCCGAUCUAGAUCUAAUG   ACU                                C   |||||||||  |||  |  ||||||||||||||||||||   |||                                A   CGUUAGUUU  UAG  C  GUAGGUUAGAUCUAGGUUGC   AAG                                U CA         AA   GU UC                    -CA   UAUACCUUCCCCAAUUUUCAUUUUAUCCAUGA
Stem-loop sequence	GCAAUCAAGCGAUCUGGUACAUCCGAUCUAGAUCUAAUGAUGACUGUUAUUUUAUAUUUAAGCCCUUCCACCUAAAACAUAGUACCUAUUUUACUUUUAACCCCUUCCAUAUGAAACCGUUGGAUCUAGAUUGGAUGCUCUGGAUAAUUUGAUUGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676294.2	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   |||||||||||*|||||||||||| targets:1878   GUGCAAUCAAACUAUCCAGAGCAU   1901 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008676292.2	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   |||||||||||*|||||||||||| targets:1705   GUGCAAUCAAACUAUCCAGAGCAU   1728 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676293.2	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   |||||||||||*|||||||||||| targets:1533   GUGCAAUCAAACUAUCCAGAGCAU   1556 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020551352.1	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   |||||||||||*|||||||||||| targets:44   GUGCAAUCAAACUAUCCAGAGCAU   67 Target Full Sequence	1.5	PREDICTED: Zea mays putative glutathione S-transferase family protein (LOC100272773), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661851.2	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   |||||||||||*|||||||||||| targets:655   GUGCAAUCAAACUAUCCAGAGCAU   678 Target Full Sequence	1.5	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008661850.2	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   |||||||||||*|||||||||||| targets:642   GUGCAAUCAAACUAUCCAGAGCAU   665 Target Full Sequence	1.5	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU954880.1	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   |||||||||||*|||||||||||| targets:641   GUGCAAUCAAACUAUCCAGAGCAU   664 Target Full Sequence	1.5	Zea mays clone 1489976 ubiquitin-fusion protein mRNA, complete cds	NA	coding protein	psRNATarget
EU971778.1	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   |||||||||||*|||||||||||| targets:627   GUGCAAUCAAACUAUCCAGAGCAU   650 Target Full Sequence	1.5	Zea mays clone 370490 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538318.1	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   ||*||||||||*|||||||||||| targets:35   GUACAAUCAAACUAUCCAGAGCAU   58 Target Full Sequence	1.5	PREDICTED: Zea mays zinc finger CCCH domain-containing protein 45 (LOC103626282), mRNA	NA	coding protein	psRNATarget
XM_008676189.2	ncRNA:24   CACGUUAGUUUAAUAGGUCUCGUA   1   ||*||||||||*|||||||||||| targets:848   GUACAAUCAAACUAUCCAGAGCAU   871 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103650617 (LOC103650617), mRNA	NA	coding protein	psRNATarget