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BaseInfo

ncRNA ID	novel_zma_miR3755
Species	Zea mays
Class	miRNA
Genome position	Chr3:221144848-221144912 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287161;SRR2287162;SRR2287164;SRR2287165
Length	24
Mature sequence(if miRNA)	1 - GUGUGUUGAGGUGGAUUGAGGUGU - 24
Stem-loop(if miRNA)	--         G                A      GUGUGUUGA GUGGAUUGAGGUGUAA UUAG   ||||||||| |||||||||||||||| |||U   UAUAUAACU UACCUAACUCCACAUU AAUU UG         G                G
Stem-loop sequence	GUGUGUUGAGGUGGAUUGAGGUGUAAAUUAGUUUAAGUUACACCUCAAUCCAUGUCAAUAUAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941642.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||||||||||||||||||=|||= targets:10   ACACCUCAAUCCACCUCAAUACAU   33 Target Full Sequence	2.5	Zea mays clone 1468727 mRNA sequence	NA	coding protein	psRNATarget
NM_001156128.2	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||||||||||||||||||=|||= targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	2.5	Zea mays protein SFT2 (LOC100283226), mRNA	NA	coding protein	psRNATarget
BT085755.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||||||||||||||||||=|||= targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds	NA	coding protein	psRNATarget
AY110392.1	ncRNA:24   UGUGG-AGUUAGGUGGAGUUGUGUG   1   |||||-||||||||||||||||||= targets:151   ACACCCUCAAUCCACCUCAACACAU   175 Target Full Sequence	3.0	Zea mays CL7038_2 mRNA sequence	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||*|||||||||||||||||||= targets:62   ACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||*|||||||||||||||||||= targets:62   ACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||*|||||||||||||||||||= targets:62   ACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
BT019068.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||||*||||||||||||=||||| targets:224   ACACCACAAUCCACCUCAGCACAC   247 Target Full Sequence	2.5	Zea mays clone Contig631.F mRNA sequence	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   ||||*|=||||||||||||||||= targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	2.0	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   ||||*|=||||||||||||||||= targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	2.0	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   ||||*|=||||||||||||||||= targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	2.0	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||=|*|||||||||||||||||= targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||=|*|||||||||||||||||= targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||=|*|||||||||||||||||= targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||=|*|||||||||||||||||= targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||=|*|||||||||||||||||= targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |||=|*|||||||||||||||||= targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   UGU---GGAGUUAGGUGGAGUUGUGUG   1   |||---||||||||||=|||||||||= targets:808   ACAAGCCCUCAAUCCAUCUCAACACAU   834 Target Full Sequence	2.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   UGU---GGAGUUAGGUGGAGUUGUGUG   1   |||---||||||||||=|||||||||= targets:808   ACAAGCCCUCAAUCCAUCUCAACACAU   834 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   UGU---GGAGUUAGGUGGAGUUGUGUG   1   |||---||||||||||=|||||||||= targets:1051   ACAAGCCCUCAAUCCAUCUCAACACAU   1077 Target Full Sequence	2.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
LQ235067.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |=||*|||||||||=||||||||= targets:61   AUACAUCAAUCCACUUCAACACAU   84 Target Full Sequence	2.5	Sequence 1062 from Patent EP2985353	NA	coding protein	psRNATarget
JB163398.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |=||*|||||||||=||||||||= targets:61   AUACAUCAAUCCACUUCAACACAU   84 Target Full Sequence	2.5	Sequence 1062 from Patent EP2559767	NA	coding protein	psRNATarget
HI402937.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |=||*|||||||||=||||||||= targets:61   AUACAUCAAUCCACUUCAACACAU   84 Target Full Sequence	2.5	Sequence 1062 from Patent EP2074227	NA	coding protein	psRNATarget
JB163947.1	ncRNA:24   UGUGGAGUU-AGGUGGAGUUGUGUG   1   ||||-||||-||||||||||||||= targets:58   ACAC-UCAAAUCCACCUCAACACAU   81 Target Full Sequence	3.0	Sequence 1611 from Patent EP2559767	NA	coding protein	psRNATarget
HI403486.1	ncRNA:24   UGUGGAGUU-AGGUGGAGUUGUGUG   1   ||||-||||-||||||||||||||= targets:58   ACAC-UCAAAUCCACCUCAACACAU   81 Target Full Sequence	3.0	Sequence 1611 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235616.1	ncRNA:24   UGUGGAGUU-AGGUGGAGUUGUGUG   1   ||||-||||-||||||||||||||= targets:58   ACAC-UCAAAUCCACCUCAACACAU   81 Target Full Sequence	3.0	Sequence 1611 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008672302.2	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUG   1   |=|*|*|||||||||||||||||= targets:2495   AUAACACAAUCCACCUCAACACAU   2518 Target Full Sequence	2.0	PREDICTED: Zea mays protein SHORT-ROOT 1 (LOC103647790), mRNA	NA	coding protein	psRNATarget