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BaseInfo

ncRNA ID	novel_zma_miR3754
Species	Zea mays
Class	miRNA
Genome position	Chr3:218246229-218246328 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR5451003;SRR1997866
Length	24
Mature sequence(if miRNA)	77 - AAAGUAUGACAAGUUAGACAGCGA - 100
Stem-loop(if miRNA)	--  -GA       U           -------------U    A         CCG   GU   CUAACUU GUCAUACUUUA              CUAA GUUAGUUGU   A   ||   ||||||| |||||||||||              |||| |||||||||   A   CG   GAUUGAA CAGUAUGAAAU              GAUU CAAUCAAUA   U AG  ACA       -           UCAUUGAAAAAACU    C         AAU
Stem-loop sequence	GUGACUAACUUUGUCAUACUUUAUCUAAAGUUAGUUGUCCGAAUUAAAUAACUAACCUUAGUCAAAAAAGUUACUUAAAGUAUGACAAGUUAGACAGCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403286.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   ||||||*|||||||||||*||||| targets:15   UCGCUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   ||||||*|||||||||||*||||| targets:15   UCGCUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   ||||||*|||||||||||*||||| targets:15   UCGCUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
EZ060318.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   |||||**||||||||||||||||| targets:151   UCGCUACCUAACUUGUCAUACUUU   174 Target Full Sequence	2.0	TSA: Zea mays contig61440, mRNA sequence	NA	coding protein	psRNATarget
AY108857.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   |=|||**||||||||||||||||| targets:331   UUGCUACCUAACUUGUCAUACUUU   354 Target Full Sequence	2.0	Zea mays PCO060055 mRNA sequence	NA	coding protein	psRNATarget
HI403284.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   |=|=||*||||*|||||||||||| targets:15   UUGUUGCCUAAAUUGUCAUACUUU   38 Target Full Sequence	2.5	Sequence 1409 from Patent EP2074227	NA	coding protein	psRNATarget
JB163745.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   |=|=||*||||*|||||||||||| targets:15   UUGUUGCCUAAAUUGUCAUACUUU   38 Target Full Sequence	2.5	Sequence 1409 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235414.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   |=|=||*||||*|||||||||||| targets:15   UUGUUGCCUAAAUUGUCAUACUUU   38 Target Full Sequence	2.5	Sequence 1409 from Patent EP2985353	NA	coding protein	psRNATarget
BT062066.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   |=|*||*|||||||||||||=||| targets:1520   UUGAUGGCUAACUUGUCAUAUUUU   1543 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0211I24 mRNA, complete cds	NA	coding protein	psRNATarget
BT064093.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   |=|*||*|||||||||||||=||| targets:1935   UUGAUGGCUAACUUGUCAUAUUUU   1958 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0137J11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175121.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   |=|*||*|||||||||||||=||| targets:1935   UUGAUGGCUAACUUGUCAUAUUUU   1958 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 83A1 (LOC100382376), mRNA	NA	coding protein	psRNATarget
EU942764.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   *=||*||*||||||||||||*||| targets:175   CUGCAGUGUAACUUGUCAUAAUUU   198 Target Full Sequence	2.5	Zea mays clone 1534827 mRNA sequence	NA	coding protein	psRNATarget
XM_020539612.1	ncRNA:24   AGCGACAGAUUGAACAGUAUGAAA   1   *=||*||*||||||||||||*||| targets:1160   CUGCAGUGUAACUUGUCAUAAUUU   1183 Target Full Sequence	2.5	PREDICTED: Zea mays putative rRNA methylase YtqB (LOC103630584), mRNA	NA	coding protein	psRNATarget