ncRNA ID | osa-miR1877 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr9:21043873-21044133 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 217 - AGAUGACAUGUGAAUGAUGAGGGG - 240 |
Stem-loop(if miRNA) |
A CG GC UG C U AAAAAA AUCAACU -- UCAUAAACAUGCAAGUUAAAAUU AUUCUAA CUCU AGGGGACAUUCUCUCAUU U CAUGUCAUC AAAUG UUAUG UUAAAAAAA GGAUAGAUUAAUAUGUGAUAGA UAACU A ||||||| |||| |||||||||||||||||| | ||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||| ||||| A UAAGAUU GAGA UCUCCUGUAGGGGAGUAG A GUACAGUAG UUUAC AAUAU AAUUUUUUU UUUAUCUAAUUAUACACUAUCU UCAAC A C -- UA GU A C AAAAAA --AUUAU AA AUCAAAAAACGUUGAACAUCUUC |
Stem-loop sequence | AUUCUAAACUCUCGAGGGGACAUUCUCUCAUUGCUUGCAUGUCAUCCAAAUGUUUAUGAAAAAAUUAAAAAAAAUCAACUGGAUAGAUUAAUAUGUGAUAGAUAACUUCAUAAACAUGCAAGUUAAAAUUAAACUUCUACAAGUUGCAAAAAACUACAACUAAUCUAUCACAUAUUAAUCUAUUUUAUUAUUUUUUUAAAAAAAAUAUAACCAUUUAGAUGACAUGUGAAUGAUGAGGGGAUGUCCUCUAGAGCUUAGAAU |
1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |