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BaseInfo

ncRNA ID osa-miR1877
Species Oryza sativa
Class miRNA
Genome position Chr9:21043873-21044133 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 217 - AGAUGACAUGUGAAUGAUGAGGGG - 240
Stem-loop(if miRNA)        A    CG                  GC UG         C     U     AAAAAA         AUCAACU                      --     UCAUAAACAUGCAAGUUAAAAUU
AUUCUAA CUCU  AGGGGACAUUCUCUCAUU  U  CAUGUCAUC AAAUG UUAUG      UUAAAAAAA       GGAUAGAUUAAUAUGUGAUAGA  UAACU                       A
||||||| ||||  ||||||||||||||||||  |  ||||||||| ||||| |||||      |||||||||       ||||||||||||||||||||||  |||||                       A
UAAGAUU GAGA  UCUCCUGUAGGGGAGUAG  A  GUACAGUAG UUUAC AAUAU      AAUUUUUUU       UUUAUCUAAUUAUACACUAUCU  UCAAC                       A
       C    --                  UA GU         A     C     AAAAAA         --AUUAU                      AA     AUCAAAAAACGUUGAACAUCUUC
Stem-loop sequence AUUCUAAACUCUCGAGGGGACAUUCUCUCAUUGCUUGCAUGUCAUCCAAAUGUUUAUGAAAAAAUUAAAAAAAAUCAACUGGAUAGAUUAAUAUGUGAUAGAUAACUUCAUAAACAUGCAAGUUAAAAUUAAACUUCUACAAGUUGCAAAAAACUACAACUAAUCUAUCACAUAUUAAUCUAUUUUAUUAUUUUUUUAAAAAAAAUAUAACCAUUUAGAUGACAUGUGAAUGAUGAGGGGAUGUCCUCUAGAGCUUAGAAU

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).