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BaseInfo

ncRNA ID novel_zma_miR3748
Species Zea mays
Class miRNA
Genome position Chr2:105855173-105855301 [+]
Reference genome RefGen_v4
Source SRR2287031
Length 24
Mature sequence(if miRNA) 1 - GACCUUGUUCGGUUGCGUCUGGAU - 24
Stem-loop(if miRNA) --GAC                      AAA     --U  AG           C   UU   U  A
     CUUGUUCGGUUGCGUCUGGAUC   AGAGA   UG  GGGGAUUAAAU CCU  CUA UC A
     ||||||||||||||||||||||   |||||   ||  ||||||||||| |||  ||| || U
     GAACAAGCCAAUGCAGACCUAG   UCUUU   AC  CCCCUAAUUUA GGA  GAU AG U
AUCCC                      --C     UUU  CU           U   GG   C  U
Stem-loop sequence GACCUUGUUCGGUUGCGUCUGGAUCAAAAGAGAUUGAGGGGGAUUAAAUCCCUUUCUAUUCAAUUUGACUAGGGAGGUAUUUAAUCCCCUCCAUUUUUUCUCGAUCCAGACGUAACCGAACAAGCCCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY110278.1
ncRNA:24   UAGGUCUGCGUUGGCUUGUUCCAG   1
  |||||||||||||||||||||*||
targets:198   AUCCAGACGCAACCGAACAAGCUC   221

1.5 Zea mays CL14707_1 mRNA sequence NA coding protein psRNATarget