Search result

BaseInfo

ncRNA ID	novel_zma_miR3745
Species	Zea mays
Class	miRNA
Genome position	Chr2:73466125-73466256 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287160;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AGGGUCUGUUUGGUUUGAUGGCUA - 24
Stem-loop(if miRNA)	--    U            A       -CU                ACUUUUCUGCCUA         C   A   AGGG CUGUUUGGUUUG UGGCUAA   UGCCACACUUUGCCUA             AGGUUAGUU UUC A   |||| |||||||||||| |||||||   ||||||||||||||||             ||||||||| ||| U   UCCC GACAAACCAAAC ACCGAUU   ACGGUGUGAAACGGAU             UCCAAUCAG AAG U AU    C            -       UAC                -------------         C   C
Stem-loop sequence	AGGGUCUGUUUGGUUUGAUGGCUAACUUGCCACACUUUGCCUAACUUUUCUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGGCACAUUUAGCCACAAACCAAACAGCCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008681615.2	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||=|||||||||||||||||||| targets:1779   UAGUCAUCAAACCAAACAGACCCU   1802 Target Full Sequence	0.0	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||=|||||||||||||||||||| targets:1257   UAGUCAUCAAACCAAACAGACCCU   1280 Target Full Sequence	0.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163656.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||||||*||||||||=|||| targets:107   UAGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1320 from Patent EP2559767	NA	coding protein	psRNATarget
HI403195.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||||||*||||||||=|||| targets:107   UAGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1320 from Patent EP2074227	NA	coding protein	psRNATarget
JB163838.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||*||||||||||||=|||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||*||||||||||||=|||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
JB163897.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||*||||||||||||=|||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||*||||||||||||=|||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235325.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||||||*||||||||=|||| targets:107   UAGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1320 from Patent EP2985353	NA	coding protein	psRNATarget
HI403436.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||*||||||||||||=|||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
HI403377.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||*||||||||||||=|||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
BT069685.2	ncRNA:24   AUCG--GUAGUUUGGUUUGUCUGGGA   1   ||||--=||==|*||||||||||||| targets:778   UAGCACUAUUGAUCCAAACAGACCCU   803 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0220B07 mRNA, complete cds	NA	coding protein	psRNATarget
AY110609.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*||*||||||||||||*|||| targets:7   UAGGCAGCAAACCAAACAGCCCCU   30 Target Full Sequence	2.5	Zea mays CL49281_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008673397.2	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*=|*||||||||||||*|||| targets:110   UAGGUAGCAAACCAAACAGCCCCU   133 Target Full Sequence	2.5	PREDICTED: Zea mays adenylate isopentenyltransferase 5, chloroplastic (LOC103649047), mRNA	NA	coding protein	psRNATarget
XM_020550009.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*=|**|||||||||||||||| targets:3751   UAGGUAGGAAACCAAACAGACCCU   3774 Target Full Sequence	2.0	PREDICTED: Zea mays GTP binding (LOC101202714), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008675272.2	ncRNA:24   AUCGGUAGUUUGGUUUGUCUGGGA   1   |||*=|**|||||||||||||||| targets:3870   UAGGUAGGAAACCAAACAGACCCU   3893 Target Full Sequence	2.0	PREDICTED: Zea mays GTP binding (LOC101202714), transcript variant X1, mRNA	NA	coding protein	psRNATarget