Search result

BaseInfo

ncRNA ID	novel_zma_miR3744
Species	Zea mays
Class	miRNA
Genome position	Chr2:72512170-72512357 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2287162
Length	24
Mature sequence(if miRNA)	165 - ACAUCUGGACAGAGUACACCGGCU - 188
Stem-loop(if miRNA)	--          A     U                        C          G   G                    G  G  G       U   CCGGUGUACU UGUCC GAUGUGUGGUCACAAAAUUUAAAG CGCCCCGGCU CAU UGUGUGCUUCUCUUCUCUUA GU GG UGCUAAG G   |||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| || || |||||||   GGCCACAUGA ACAGG CUACACACCAGUGUUUUAAAUUUC GCGGGGCCGA GUA ACACGCGAAGAGAAGAGAAU CA CC AUGAUUC A UC          G     U                        A          A   G                    A  G  G       U
Stem-loop sequence	CCGGUGUACUAUGUCCUGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUGCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGCCGGGGCGACUUUAAAUUUUGUGACCACACAUCUGGACAGAGUACACCGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538582.1	ncRNA:24   UCGGCCACAUGAGACAGGUCUACA   1   ||||||||||||||||||=||||| targets:3219   AGCCGGUGUACUCUGUCCGGAUGU   3242 Target Full Sequence	1.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538581.1	ncRNA:24   UCGGCCACAUGAGACAGGUCUACA   1   ||||||||||||||||||=||||| targets:3357   AGCCGGUGUACUCUGUCCGGAUGU   3380 Target Full Sequence	1.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645917.2	ncRNA:24   UCGGCCACAUGAGACAGGUCUACA   1   |||=*|*||*|||||||||||||* targets:965   AGCUUGCGUUCUCUGUCCAGAUGA   988 Target Full Sequence	3.0	PREDICTED: Zea mays 3-phosphoinositide-dependent protein kinase-1 (LOC100384040), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT062664.1	ncRNA:24   UCGGCCACAUGAGACAGGUCUACA   1   |||=*|*||*|||||||||||||* targets:1059   AGCUUGCGUUCUCUGUCCAGAUGA   1082 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0330A18 mRNA, complete cds	NA	coding protein	psRNATarget
BT084870.1	ncRNA:24   UCGGCCACAUGAGACAGGUCUACA   1   |||=*|*||*|||||||||||||* targets:1084   AGCUUGCGUUCUCUGUCCAGAUGA   1107 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0198A07 mRNA, complete cds	NA	coding protein	psRNATarget
BT068987.1	ncRNA:24   UCGGCCACAUGAGACAGGUCUACA   1   |||=*|*||*|||||||||||||* targets:1153   AGCUUGCGUUCUCUGUCCAGAUGA   1176 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0106I02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176648.1	ncRNA:24   UCGGCCACAUGAGACAGGUCUACA   1   |||=*|*||*|||||||||||||* targets:1153   AGCUUGCGUUCUCUGUCCAGAUGA   1176 Target Full Sequence	3.0	Zea mays 3-phosphoinositide-dependent protein kinase-1 (LOC100384040), mRNA	NA	coding protein	psRNATarget
XM_008645916.2	ncRNA:24   UCGGCCACAUGAGACAGGUCUACA   1   |||=*|*||*|||||||||||||* targets:1146   AGCUUGCGUUCUCUGUCCAGAUGA   1169 Target Full Sequence	3.0	PREDICTED: Zea mays 3-phosphoinositide-dependent protein kinase-1 (LOC100384040), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963143.1	ncRNA:24   UCGGCCACAUGAGACAGGUCUACA   1   |||=*|*||*|||||||||||||* targets:1202   AGCUUGCGUUCUCUGUCCAGAUGA   1225 Target Full Sequence	3.0	Zea mays clone 258253 mRNA sequence	NA	coding protein	psRNATarget