Search result

BaseInfo

ncRNA ID	novel_zma_miR3740
Species	Zea mays
Class	miRNA
Genome position	Chr2:11215211-11215324 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AAAGUAGAAUAAAAUAGAGGGACU - 24
Stem-loop(if miRNA)	--  A   C                A  C  A              A   C     A   UC UUC AUUUUAUUUUAUUUUA UA CU AAUUGUUAAAUAUG AAA UAAAA U   || ||| |||||||||||||||| || || |||||||||||||| ||| |||||   AG GAG UAAAAUAAGAUGAAAU AU GA UUAACAGUUUAUGC UUU AUUUU U UC  G   A                A  A  C              C   A     A
Stem-loop sequence	UCAUUCCAUUUUAUUUUAUUUUAAUACCUAAAUUGUUAAAUAUGAAAACUAAAAAUUAUUUUAAUUUCCGUAUUUGACAAUUCAGAUAAUAAAGUAGAAUAAAAUAGAGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001147048.1	ncRNA:24   UCAGGGAGAUAAAAUAAGAUGAAA   1   |||==|||||||||||||||=||| targets:1105   AGUUUCUCUAUUUUAUUCUAUUUU   1128 Target Full Sequence	1.5	Zea mays Nudix hydrolase 23 chloroplastic (LOC100272585), mRNA	NA	coding protein	psRNATarget
BT038994.1	ncRNA:24   UCAGGGAGAUAAAAUAAGAUGAAA   1   |||==|||||||||||||||=||| targets:1105   AGUUUCUCUAUUUUAUUCUAUUUU   1128 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0348D04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:24   UCAGGGAGAUAAAAUAAGAUGAAA   1   |||||||*||||||||||||=||| targets:1068   AGUCCCUAUAUUUUAUUCUAUUUU   1091 Target Full Sequence	2.5	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   UCAGGGAGAUAAAAUAAGAUGAAA   1   ||||||||*|||||||||*||||| targets:2989   AGUCCCUCCAUUUUAUUCCACUUU   3012 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   UCAGGGAGAUAAAAUAAGAUGAAA   1   ||||||||*|||||||||*||||| targets:2600   AGUCCCUCCAUUUUAUUCCACUUU   2623 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   UCAGGGAGAUAAAAUAAGAUGAAA   1   ||||||||*|||||||||*||||| targets:482   AGUCCCUCCAUUUUAUUCCACUUU   505 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget