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BaseInfo

ncRNA ID	osa-miR169k
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:19792133-19792288 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UAGCCAAGGAUGACUUGCCUG - 31
Stem-loop(if miRNA)	U          -         U    U      -- GC   U  G    AG     U   UUAAUUAG    A   U UG     CUGUCUAGAU AGCCAAGGA GACU GCCUGU  G  CUC UG AGAG  AGGUG AGC        CAGC UGG U  AGCA  |||||||||| ||||||||| |||| ||||||  |  ||| || ||||  ||||| |||        |||| ||| |  |||U  GGCGGGUCUG UCGGUUCCU CUGA CGGACA  C  GAG AC UCUC  UUCGC UCG        GUUG GCU A  UCGU C          A         -    -      UU UA   U  G    -G     U   -----CUA    -   - GU
Stem-loop sequence	UCUGUCUAGAUAGCCAAGGAUGACUUGCCUGUGGCCUCUUGGAGAGAGAGGUGUAGCUUAAUUAGCAGCAUGGUUUGAGCAUUGCUUGAUCGGUUGAUCGCUUCGCUUGCUCUGCAUGAGAUCUUACAGGCAGUCUCCUUGGCUAGUCUGGGCGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767949.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:964   UAGGCAAUUCAUCCUUGGCUU   984 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
AK318574.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:989   UAGGCAAUUCAUCCUUGGCUU   1009 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence	NA	coding protein	psRNATarget
XM_015767947.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:1217   UAGGCAAUUCAUCCUUGGCUU   1237 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
XM_015767946.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:1341   UAGGCAAUUCAUCCUUGGCUU   1361 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
XM_015790064.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||= targets:1189   GUGGCAAUUCAUCCUUGGCUG   1209 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-2 (LOC4342440), mRNA	nuclear transcription factor Y subunit A-2(LOC4342440)	coding protein	psRNATarget
JC611919.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:807   GUGGCAAUUCAUCCUUGGCUU   827 Target Full Sequence	2.0	Sequence 81 from Patent WO2014106838	NA	coding protein	psRNATarget
AB288031.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1020   GUGGCAAUUCAUCCUUGGCUU   1040 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2E mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
AK101684.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1166   GUGGCAAUUCAUCCUUGGCUU   1186 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence	NA	coding protein	psRNATarget
CT834459.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1237   GUGGCAAUUCAUCCUUGGCUU   1257 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA222O23, full insert sequence	NA	coding protein	psRNATarget
XM_015791076.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1198   GUGGCAAUUCAUCCUUGGCUU   1218 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
EU847011.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1116   GUGGCAAUUCAUCCUUGGCUU   1136 Target Full Sequence	2.0	Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
XM_015791073.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1329   GUGGCAAUUCAUCCUUGGCUU   1349 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK062135.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1244   GUGGCAAUUCAUCCUUGGCUU   1264 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015791075.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1353   GUGGCAAUUCAUCCUUGGCUU   1373 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK071595.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1280   GUGGCAAUUCAUCCUUGGCUU   1300 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023106F21, full insert sequence	NA	coding protein	psRNATarget
XM_015776494.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1286   GUGGCAAUUCAUCCUUGGCUU   1306 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4333094), mRNA	nuclear transcription factor Y subunit A-4(LOC4333094)	coding protein	psRNATarget
XM_015791074.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:2327   GUGGCAAUUCAUCCUUGGCUU   2347 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).