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BaseInfo

ncRNA ID	novel_zma_miR3735
Species	Zea mays
Class	miRNA
Genome position	Chr9:46115071-46115185 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	92 - AAAAUGGAAUAAAAUAAUGGGACU - 115
Stem-loop(if miRNA)	--    UAC                G   CA      UC                 C   UCCC   AUUUUAUUCCAUUUUA UUU  AAAUUG  AAAUAUAGAAACUAAAA U   ||||   |||||||||||||||| |||  ||||||  ||||||||||||||||| C   AGGG   UAAAAUAAGGUAAAAU AGA  UUUAAC  UUUAUAUCUUUGAUUUU U UC    UAA                G   UA      GA                 A
Stem-loop sequence	UCCCUACAUUUUAUUCCAUUUUAGUUUCAAAAUUGUCAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCUAUAUUUAGCAAUUUAUAGAGUAAAAUGGAAUAAAAUAAUGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654984.2	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||||*||||||||||||||| targets:2933   AGUCCCAUCAUUUUAUUCCAUUUU   2956 Target Full Sequence	1.0	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||||*||||||||||||||| targets:170   AGUCCCAUCAUUUUAUUCCAUUUU   193 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||||*||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUUU   68 Target Full Sequence	1.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||||*||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUUU   68 Target Full Sequence	1.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||||*||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUUU   68 Target Full Sequence	1.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||||*|||||||||=||||| targets:1568   AGUCCCAUCAUUUUAUUCUAUUUU   1591 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163501.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||||*|||||||||=||||| targets:31   AGUCCCAUCAUUUUAUUCUAUUUU   54 Target Full Sequence	2.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||||*|||||||||=||||| targets:31   AGUCCCAUCAUUUUAUUCUAUUUU   54 Target Full Sequence	2.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
HI403040.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||||*|||||||||=||||| targets:31   AGUCCCAUCAUUUUAUUCUAUUUU   54 Target Full Sequence	2.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||*|*||||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAUUUU   2122 Target Full Sequence	2.0	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||*|*||||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAUUUU   2122 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||*|*||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52 Target Full Sequence	2.0	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||*|*||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52 Target Full Sequence	2.0	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   UCAGGGUAAUAAAAUAAGGUAAAA   1   ||||||*|*||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52 Target Full Sequence	2.0	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget