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BaseInfo

ncRNA ID	novel_zma_miR3733
Species	Zea mays
Class	miRNA
Genome position	Chr2:39907416-39907538 [-]
Reference genome	RefGen_v4
Source	SRR2287031
Length	21
Mature sequence(if miRNA)	103 - CUUGUUUGGGAGUAAGUGGAA - 123
Stem-loop(if miRNA)	--C                     AA           A        A G     C      A    UUGUUUGGGAGUAAGUGGAAU  AGAGAAUUGAG GGGCUAUA U CCUUG UAUUCA U    |||||||||||||||||||||  ||||||||||| |||||||| | ||||| ||||||    AACAAACCCUCGUUCACUUUA  UCUCUUAACUC CCCGAUAU A GGAAC AUAAGU U CCA                     CC           -        C G     A      U
Stem-loop sequence	CUUGUUUGGGAGUAAGUGGAAUAAAGAGAAUUGAGAGGGCUAUAAUGCCUUGCUAUUCAAUUUUGAAUAACAAGGGACUAUAGCCCCUCAAUUCUCUCCAUUUCACUUGCUCCCAAACAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238157.1	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   ||=|||||=|||||||||||| targets:107   UUUCACUUGCUCCCAAACAAG   127 Target Full Sequence	2.5	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
JB166488.1	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   ||=|||||=|||||||||||| targets:107   UUUCACUUGCUCCCAAACAAG   127 Target Full Sequence	2.5	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
HI406027.1	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   ||=|||||=|||||||||||| targets:107   UUUCACUUGCUCCCAAACAAG   127 Target Full Sequence	2.5	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
BT062966.1	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   ||=|||||=|||||||||||| targets:2643   UUUCACUUGCUCCCAAACAAG   2663 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   ||=|||||=|||||||||||| targets:2643   UUUCACUUGCUCCCAAACAAG   2663 Target Full Sequence	2.5	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   ||=|||||=|||||||||||| targets:2731   UUUCACUUGCUCCCAAACAAG   2751 Target Full Sequence	2.5	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546438.1	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   |||||=||||||||||||=|| targets:3235   UUCCAUUUACUCCCAAACGAG   3255 Target Full Sequence	2.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103637688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT017823.1	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   *||||=||=|||||||||||| targets:871   AUCCAUUUGCUCCCAAACAAG   891 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   *||||=||=|||||||||||| targets:3499   AUCCAUUUGCUCCCAAACAAG   3519 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:21   AAGGUGAAUGAGGGUUUGUUC   1   *|||*|||||||||||||||| targets:1086   AUCCCCUUACUCCCAAACAAG   1106 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget