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BaseInfo

ncRNA ID	ath-miR159b-3p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:6220646-6220841 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	168 - UUUGGAUUGAAGGGAGCUCUU - 188
Stem-loop(if miRNA)	------G            GA       U       UU   ------    UG    -      G  A  C     AUC      -----         AAU             GAAGAGCUCCUU  AGUUCAA GGAGGGU  AGC      AGGG  AAGU AAAGCU CU AG UAUGG   CCAUAA     GCCUUAUCA   UCAAUA        ||||||||||||  ||||||| |||||||  |||      ||||  |||| |||||| || || |||||   ||||||     |||||||||   |||||U        CUUCUCGAGGGA  UUAGGUU CUUCUCA  UCG      UCCC  UUCA UUUCGA GA UC AUACC   GGUAUU     UGGAAUAGU   AGUUAA CUCUCUA            AG       U       CU   GUAAUU    CA    C      G  C  U     GUA      UUUUU         ---
Stem-loop sequence	GGAAGAGCUCCUUGAAGUUCAAUGGAGGGUUUAGCAGGGUGAAGUAAAGCUGCUAAGCUAUGGAUCCCAUAAGCCUUAUCAAAUUCAAUAUAAUUGAUGAUAAGGUUUUUUUUAUGGAUGCCAUAUCUCAGGAGCUUUCACUUACCCCUUUAAUGGCUUCACUCUUCUUUGGAUUGAAGGGAGCUCUUCAUCUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT026381.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:896   UAGAGCUUCCUUCAAACCAAA   916 Target Full Sequence	2.5	Arabidopsis thaliana At2g32460 mRNA, complete cds	NA	coding protein	psRNATarget
AY519576.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:896   UAGAGCUUCCUUCAAACCAAA   916 Target Full Sequence	2.5	Arabidopsis thaliana MYB transcription factor (At2g32460) mRNA, complete cds	NA	coding protein	psRNATarget
BX819423.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:977   UAGAGCUUCCUUCAAACCAAA   997 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB76ZG08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX819091.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:985   UAGAGCUUCCUUCAAACCAAA   1005 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZC06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK319141.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:973   UAGAGCUUCCUUCAAACCAAA   993 Target Full Sequence	2.5	Arabidopsis thaliana AT2G32460 mRNA, complete cds, clone: RAFL24-12-E02	NA	coding protein	psRNATarget
AF411970.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:947   UAGAGCUUCCUUCAAACCAAA   967 Target Full Sequence	2.5	Arabidopsis thaliana putative transcription factor MYB101 (MYB101) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001084524.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:972   UAGAGCUUCCUUCAAACCAAA   992 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 101 (MYB101), mRNA	myb domain protein 101(MYB101)	coding protein	psRNATarget
AK229342.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:1004   UAGAGCUUCCUUCAAACCAAA   1024 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for putative MYB family transcription factor, complete cds, clone: RAFL16-59-F24	NA	coding protein	psRNATarget
NM_128805.4	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *||||||=|||||||*||||| targets:1016   UAGAGCUUCCUUCAAACCAAA   1036 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 101 (MYB101), mRNA	myb domain protein 101(MYB101)	coding protein	psRNATarget
NM_128252.6	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||= targets:827   UGGAGCUCCCUUCAUUCCAAG   847 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 104 (MYB104), partial mRNA	myb domain protein 104(MYB104)	coding protein	psRNATarget
AF062875.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:717   UGGAGCUCCCUUCAUUCCAAU   737 Target Full Sequence	2.5	Arabidopsis thaliana putative transcription factor (MYB33) mRNA, partial cds	NA	coding protein	psRNATarget
AY519616.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:938   UGGAGCUCCCUUCAUUCCAAU   958 Target Full Sequence	2.5	Arabidopsis thaliana MYB transcription factor (At5g06100) mRNA, complete cds	NA	coding protein	psRNATarget
BT006049.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:938   UGGAGCUCCCUUCAUUCCAAU   958 Target Full Sequence	2.5	Arabidopsis thaliana clone U51311 putative MYB family transcription factor (At5g06100) mRNA, complete cds	NA	coding protein	psRNATarget
AY519585.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:977   UGGAGCUCCCUUCAUUCCAAU   997 Target Full Sequence	2.5	Arabidopsis thaliana MYB transcription factor (At3g11440) mRNA, complete cds	NA	coding protein	psRNATarget
BT005120.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:977   UGGAGCUCCCUUCAUUCCAAU   997 Target Full Sequence	2.5	Arabidopsis thaliana clone U20731 putative Myb DNA-binding protein (At3g11440) mRNA, complete cds	NA	coding protein	psRNATarget
NM_120692.3	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1161   UGGAGCUCCCUUCAUUCCAAU   1181 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 33 (MYB33), mRNA	myb domain protein 33(MYB33)	coding protein	psRNATarget
BX824591.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1153   UGGAGCUCCCUUCAUUCCAAU   1173 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH59ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX822934.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1157   UGGAGCUCCCUUCAUUCCAAU   1177 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB73ZH07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001337927.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1149   UGGAGCUCCCUUCAUUCCAAU   1169 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 65 (MYB65), mRNA	myb domain protein 65(MYB65)	coding protein	psRNATarget
BT003940.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1136   UGGAGCUCCCUUCAUUCCAAU   1156 Target Full Sequence	2.5	Arabidopsis thaliana clone RAFL15-06-P04 (R20731) putative Myb DNA-binding protein (At3g11440) mRNA, complete cds	NA	coding protein	psRNATarget
AF411969.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1066   UGGAGCUCCCUUCAUUCCAAU   1086 Target Full Sequence	2.5	Arabidopsis thaliana putative transcription factor MYB33 (MYB33) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001337926.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1223   UGGAGCUCCCUUCAUUCCAAU   1243 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 65 (MYB65), mRNA	myb domain protein 65(MYB65)	coding protein	psRNATarget
AK118937.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1161   UGGAGCUCCCUUCAUUCCAAU   1181 Target Full Sequence	2.5	Arabidopsis thaliana At5g06100 mRNA for putative transcription factor MYB33, complete cds, clone: RAFL21-27-I01	NA	coding protein	psRNATarget
NM_111977.5	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1212   UGGAGCUCCCUUCAUUCCAAU   1232 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 65 (MYB65), mRNA	myb domain protein 65(MYB65)	coding protein	psRNATarget
NM_180448.2	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1240   UGGAGCUCCCUUCAUUCCAAU   1260 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 33 (MYB33), mRNA	myb domain protein 33(MYB33)	coding protein	psRNATarget
NM_001337925.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1212   UGGAGCUCCCUUCAUUCCAAU   1232 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 65 (MYB65), mRNA	myb domain protein 65(MYB65)	coding protein	psRNATarget
NM_001085068.2	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1321   UGGAGCUCCCUUCAUUCCAAU   1341 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 33 (MYB33), mRNA	myb domain protein 33(MYB33)	coding protein	psRNATarget
NM_001342849.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1498   UGGAGCUCCCUUCAUUCCAAU   1518 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 33 (MYB33), mRNA	myb domain protein 33(MYB33)	coding protein	psRNATarget
NM_001342848.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||*|||||* targets:1597   UGGAGCUCCCUUCAUUCCAAU   1617 Target Full Sequence	2.5	Arabidopsis thaliana myb domain protein 33 (MYB33), mRNA	myb domain protein 33(MYB33)	coding protein	psRNATarget
AY219137.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *|||||*||||||||*||||| targets:438   UAGAGCCCCCUUCAAACCAAA   458 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g34010/T14G11.13) mRNA, complete cds	NA	coding protein	psRNATarget
NM_128952.3	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *|||||*||||||||*||||| targets:758   UAGAGCCCCCUUCAAACCAAA   778 Target Full Sequence	2.5	Arabidopsis thaliana verprolin mRNA	verprolin(AT2G34010)	coding protein	psRNATarget
NM_001336480.1	ncRNA:21   UUCUCGAGGGAAGUUAGGUUU   1   *|||||*||||||||*||||| targets:758   UAGAGCCCCCUUCAAACCAAA   778 Target Full Sequence	2.5	Arabidopsis thaliana verprolin mRNA	verprolin(AT2G34010)	coding protein	psRNATarget

Reference

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2	PMID:12225663 "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana"; Park W, Li J, Song R, Messing J, Chen X; Curr Biol. 12:1484-1495(2002).
3	PMID:12202040 "Prediction of plant microRNA targets"; Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP; Cell. 110:513-520(2002).
4	PMID:16040653 "Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005).
5	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
6	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
7	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).