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BaseInfo

ncRNA ID novel_zma_miR3722
Species Zea mays
Class miRNA
Genome position Chr9:30492432-30492512 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 58 - UAUAUUUGGCAAUUUAAGAACUAA - 81
Stem-loop(if miRNA) --   -  C      AG       U    C       U  A
  AGU CU UAAAUU  UAAAUAU GGAA UAAAAUA AG U
  ||| || ||||||  ||||||| |||| ||||||| || A
  UCA GA AUUUAA  GUUUAUA CUUU AUUUUAU UC A
AA   A  -      CG       U    A       C  U
Stem-loop sequence AGUCUCUAAAUUAGUAAAUAUUGGAACUAAAAUAUAGAUAAUCUCUAUUUUAAUUUCUAUAUUUGGCAAUUUAAGAACUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU956677.1
ncRNA:24   AAUCAAGAAUUUAACGGUUUAUAU   1
  |||||||**|||||||||||||||
targets:2061   UUAGUUCCAAAAUUGCCAAAUAUA   2084

2.0 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   AAUCAAGAAUUUAACGGUUUAUAU   1
  |||||*|*|||||||||||||||=
targets:2173   UUAGUCCCUAAAUUGCCAAAUAUG   2196

3.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget