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BaseInfo

ncRNA ID	osa-miR5808
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:18739255-18739333 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	2 - ACUAAAUCGUUUCUGAUCGUUGGA - 25
Stem-loop(if miRNA)	C     UG              CUG    AG UACUAAAU GUUUC  AUCGUUGGAUUUAG   GAUA  A |||||||| |||||  ||||||||||||||   ||||  U AUGGUUUA CAAAG  UAGCGACCUAGGUU   UUAU  A         A     GU              --A    GU
Stem-loop sequence	UACUAAAUCGUUUCUGAUCGUUGGAUUUAGCUGGAUAAGAUAUGUAUUAUUGGAUCCAGCGAUUGGAAACAAUUUGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK108234.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   ||||||||||=||||||||||||| targets:500   UCCAACGAUCGGAAACGAUUUAGU   523 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence	NA	coding protein	psRNATarget
XM_015778221.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   ||||||||||=||||||||||=|| targets:3062   UCCAACGAUCGGAAACGAUUUGGU   3085 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
XM_015778220.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   ||||||||||=||||||||||=|| targets:3113   UCCAACGAUCGGAAACGAUUUGGU   3136 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
JB163994.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   *|||||||||=|||||*||||||| targets:60   ACCAACGAUCGGAAACAAUUUAGU   83 Target Full Sequence	2.5	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
HI403533.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   *|||||||||=|||||*||||||| targets:60   ACCAACGAUCGGAAACAAUUUAGU   83 Target Full Sequence	2.5	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235663.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   *|||||||||=|||||*||||||| targets:60   ACCAACGAUCGGAAACAAUUUAGU   83 Target Full Sequence	2.5	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
HI404005.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   |=||-|||||=||||||||||=|| targets:23   UUCA-CGAUCGGAAACGAUUUGGU   45 Target Full Sequence	2.5	Sequence 2130 from Patent EP2074227	NA	coding protein	psRNATarget
JB164466.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   |=||-|||||=||||||||||=|| targets:23   UUCA-CGAUCGGAAACGAUUUGGU   45 Target Full Sequence	2.5	Sequence 2130 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236135.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   |=||-|||||=||||||||||=|| targets:23   UUCA-CGAUCGGAAACGAUUUGGU   45 Target Full Sequence	2.5	Sequence 2130 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015758597.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   ||||*||||*=||||||||||||| targets:914   UCCAUCGAUGGGAAACGAUUUAGU   937 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group probable glutathione S-transferase GSTU6 (LOC4349191), mRNA	probable glutathione S-transferase GSTU6(LOC4349191)	coding protein	psRNATarget
AK059726.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   ||||*||||*=||||||||||||| targets:917   UCCAUCGAUGGGAAACGAUUUAGU   940 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-201-C07, full insert sequence	NA	coding protein	psRNATarget
AF402801.1	ncRNA:24   AGGUUGCUAGUCUUUGCUAAAUCA   1   ||||*||||*=||||||||||||| targets:933   UCCAUCGAUGGGAAACGAUUUAGU   956 Target Full Sequence	2.0	Oryza sativa (japonica cultivar-group) clone S14053 putative glutathione S-transferase OsGSTU14 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).