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BaseInfo

ncRNA ID novel_zma_miR3716
Species Zea mays
Class miRNA
Genome position Chr2:229745174-229745239 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR2287163
Length 24
Mature sequence(if miRNA) 43 - GUUUUGUUUUAGUUGUCGUUGGAU - 66
Stem-loop(if miRNA) --     G          CG        AGCAA
  GUUUU UUUUAGUUGU  UUGGAUAG     A
  ||||| ||||||||||  ||||||||
  CAAAG AAAAUCAACA  GACCUAUC     A
GG     A          AG        AAAUU
Stem-loop sequence GUUUUGUUUUAGUUGUCGUUGGAUAGAGCAAAAUUAAACUAUCCAGGAACAACUAAAAAGAAACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001112301.2
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=||||||||||||||||||
targets:1368   AUCCAGCGACAACUAAAACAAAAC   1391

1.0 Zea mays senescence-inducible chloroplast stay-green protein 2 (SGR2), mRNA NA coding protein psRNATarget
EU955357.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=||||||||||||||||||
targets:1306   AUCCAGCGACAACUAAAACAAAAC   1329

1.0 Zea mays clone 1529261 senescence-inducible chloroplast stay-green protein 1 mRNA, complete cds; nuclear gene for chloroplast product NA coding protein psRNATarget
EU952581.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||||||||||||||||||=|||||
targets:511   AUCCAACGACAACUAAAAUAAAAC   534

1.5 Zea mays clone 1283791 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149050.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||||||||||||||||||=|||||
targets:511   AUCCAACGACAACUAAAAUAAAAC   534

1.5 Zea mays hypothetical protein (LOC100274760), mRNA NA coding protein psRNATarget
JB166836.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||||||||||||||||||=|||||
targets:45   AUCCAACGACAACUAAAAUAAAAC   68

1.5 Sequence 4500 from Patent EP2559767 NA coding protein psRNATarget
LQ238505.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||||||||||||||||||=|||||
targets:45   AUCCAACGACAACUAAAAUAAAAC   68

1.5 Sequence 4500 from Patent EP2985353 NA coding protein psRNATarget
HI406375.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||||||||||||||||||=|||||
targets:45   AUCCAACGACAACUAAAAUAAAAC   68

1.5 Sequence 4500 from Patent EP2074227 NA coding protein psRNATarget
HI406784.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||||||||||||||||=||||
targets:44   AUCCAACGACAACUAAAACGAAAC   67

1.5 Sequence 4909 from Patent EP2074227 NA coding protein psRNATarget
LQ238914.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||||||||||||||||=||||
targets:44   AUCCAACGACAACUAAAACGAAAC   67

1.5 Sequence 4909 from Patent EP2985353 NA coding protein psRNATarget
JB167245.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||||||||||||||||=||||
targets:44   AUCCAACGACAACUAAAACGAAAC   67

1.5 Sequence 4909 from Patent EP2559767 NA coding protein psRNATarget
XM_020546693.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2207   AUCCAGCGACAACUAAAACGAAAC   2230

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020546692.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020547478.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:3231   AUCCAGCGACAACUAAAACGAAAC   3254

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547479.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:3231   AUCCAGCGACAACUAAAACGAAAC   3254

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546684.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2308   AUCCAGCGACAACUAAAACGAAAC   2331

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546683.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2283   AUCCAGCGACAACUAAAACGAAAC   2306

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546689.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2228   AUCCAGCGACAACUAAAACGAAAC   2251

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020546691.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020546686.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2290   AUCCAGCGACAACUAAAACGAAAC   2313

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546687.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2290   AUCCAGCGACAACUAAAACGAAAC   2313

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020546685.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2290   AUCCAGCGACAACUAAAACGAAAC   2313

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546694.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA NA coding protein psRNATarget
XM_008666445.2
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020546695.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008669138.2
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2853   AUCCAGCGACAACUAAAACGAAAC   2876

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008669142.2
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2721   AUCCAGCGACAACUAAAACGAAAC   2744

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008669143.2
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2791   AUCCAGCGACAACUAAAACGAAAC   2814

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020537567.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:1502   AUCCAGCGACAACUAAAACGAAAC   1525

2.5 PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008677351.2
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:2107   AUCCAGCGACAACUAAAACGAAAC   2130

2.5 PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA NA coding protein psRNATarget
XM_008655254.2
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:1098   AUCCAGCGACAACUAAAACGAAAC   1121

2.5 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541157.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:1079   AUCCAGCGACAACUAAAACGAAAC   1102

2.5 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541158.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:1077   AUCCAGCGACAACUAAAACGAAAC   1100

2.5 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X3, mRNA NA coding protein psRNATarget
BT065083.2
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:256   AUCCAGCGACAACUAAAACGAAAC   279

2.5 Zea mays full-length cDNA clone ZM_BFb0081B22 mRNA, complete cds NA coding protein psRNATarget
EU944684.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:751   AUCCAGCGACAACUAAAACGAAAC   774

2.5 Zea mays clone 226132 mRNA sequence NA coding protein psRNATarget
EU952378.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:763   AUCCAGCGACAACUAAAACGAAAC   786

2.5 Zea mays clone 1278936 mitochondrial import inner membrane translocase subunit TIM14 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EZ112557.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:98   AUCCAGCGACAACUAAAACGAAAC   121

2.5 TSA: Zea mays contig48218, mRNA sequence NA coding protein psRNATarget
HI408598.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:55   AUCCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 6723 from Patent EP2074227 NA coding protein psRNATarget
JB169059.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:55   AUCCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 6723 from Patent EP2559767 NA coding protein psRNATarget
LQ240728.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:55   AUCCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 6723 from Patent EP2985353 NA coding protein psRNATarget
JB163549.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:43   AUCCAGCGACAACUAAAACGAAAC   66

2.5 Sequence 1213 from Patent EP2559767 NA coding protein psRNATarget
LQ235218.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:43   AUCCAGCGACAACUAAAACGAAAC   66

2.5 Sequence 1213 from Patent EP2985353 NA coding protein psRNATarget
HI403088.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  |||||=|||||||||||||=||||
targets:43   AUCCAGCGACAACUAAAACGAAAC   66

2.5 Sequence 1213 from Patent EP2074227 NA coding protein psRNATarget
JB167731.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||=||=|||||||||||||=||||
targets:56   AUUCAGCGACAACUAAAACGAAAC   79

2.5 Sequence 5395 from Patent EP2559767 NA coding protein psRNATarget
LQ239400.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||=||=|||||||||||||=||||
targets:56   AUUCAGCGACAACUAAAACGAAAC   79

2.5 Sequence 5395 from Patent EP2985353 NA coding protein psRNATarget
HI407270.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||=||=|||||||||||||=||||
targets:56   AUUCAGCGACAACUAAAACGAAAC   79

2.5 Sequence 5395 from Patent EP2074227 NA coding protein psRNATarget
JB167690.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||=||=|||||||||||||=||||
targets:55   AUUCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 5354 from Patent EP2559767 NA coding protein psRNATarget
HI407229.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||=||=|||||||||||||=||||
targets:55   AUUCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 5354 from Patent EP2074227 NA coding protein psRNATarget
LQ239359.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||=||=|||||||||||||=||||
targets:55   AUUCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 5354 from Patent EP2985353 NA coding protein psRNATarget
NM_001305845.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||==|=|||||||||||||=||||
targets:2270   AUUUAGCGACAACUAAAACGAAAC   2293

2.5 Zea mays uncharacterized LOC542022 (LOC542022), mRNA NA coding protein psRNATarget
LQ237988.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||==|=|||||||||||||=||||
targets:58   AUUUAGCGACAACUAAAACGAAAC   81

2.5 Sequence 3983 from Patent EP2985353 NA coding protein psRNATarget
HI405858.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||==|=|||||||||||||=||||
targets:58   AUUUAGCGACAACUAAAACGAAAC   81

2.5 Sequence 3983 from Patent EP2074227 NA coding protein psRNATarget
JB166319.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ||==|=|||||||||||||=||||
targets:58   AUUUAGCGACAACUAAAACGAAAC   81

2.5 Sequence 3983 from Patent EP2559767 NA coding protein psRNATarget
BT066708.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ***|==|||||||||||||=||||
targets:149   UAGCGGCGACAACUAAAACGAAAC   172

2.5 Zea mays full-length cDNA clone ZM_BFb0054D21 mRNA, complete cds NA coding protein psRNATarget
HI407319.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ***|==|||||||||||||=||||
targets:221   UAGCGGCGACAACUAAAACGAAAC   244

2.5 Sequence 5444 from Patent EP2074227 NA coding protein psRNATarget
JB167780.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ***|==|||||||||||||=||||
targets:221   UAGCGGCGACAACUAAAACGAAAC   244

2.5 Sequence 5444 from Patent EP2559767 NA coding protein psRNATarget
LQ239449.1
ncRNA:24   UAGGUUGCUGUUGAUUUUGUUUUG   1
  ***|==|||||||||||||=||||
targets:221   UAGCGGCGACAACUAAAACGAAAC   244

2.5 Sequence 5444 from Patent EP2985353 NA coding protein psRNATarget
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