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BaseInfo

ncRNA ID	novel_zma_miR3715
Species	Zea mays
Class	miRNA
Genome position	Chr2:229808031-229808119 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287165;SRR1997865
Length	23
Mature sequence(if miRNA)	1 - CUCGGCAAAGCCGUCGGCACUCA - 23
Stem-loop(if miRNA)	--       --    C       ----U    CG A         UA   AGUGCUG  GGCU UGCCGAG     GUCC  C CUCGGUAAA  A   |||||||  |||| |||||||     ||||  | |||||||||  G   UCACGGC  CCGA ACGGCUC     CAGG  G GAGCUAUUU  A AC       UG    A       CGUUU    AU C         CU
Stem-loop sequence	AGUGCUGGGCUCUGCCGAGUGUCCCGCACUCGGUAAAUAAGAUCUUUAUCGAGCGUAGGACUUUGCCUCGGCAAAGCCGUCGGCACUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU972213.1	ncRNA:23   ACUCACGGCUGCCGAAACGGCUC   1   **=**|*|||||||||||||||| targets:1147   ACGACGACGACGGCUUUGCCGAG   1169 Target Full Sequence	2.0	Zea mays clone 377527 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035267.1	ncRNA:23   ACUCACGGCUGCCGAAACGGCUC   1   **=**|*|||||||||||||||| targets:1233   ACGACGACGACGGCUUUGCCGAG   1255 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0052G14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538839.1	ncRNA:23   ACUCACGGCUGCCGAAACGGCUC   1   **=**|*|||||||||||||||| targets:1327   ACGACGACGACGGCUUUGCCGAG   1349 Target Full Sequence	2.0	PREDICTED: Zea mays Small nuclear RNA activating complex (SNAPc) subunit SNAP43 protein (pco140565), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008649304.2	ncRNA:23   ACUCACGGCUGCCGAAACGGCUC   1   **=**|*|||||||||||||||| targets:1356   ACGACGACGACGGCUUUGCCGAG   1378 Target Full Sequence	2.0	PREDICTED: Zea mays Small nuclear RNA activating complex (SNAPc) subunit SNAP43 protein (pco140565), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT023987.1	ncRNA:23   ACUCACGGCUGCCGAAACGGCUC   1   **=**|*|||||||||||||||| targets:1361   ACGACGACGACGGCUUUGCCGAG   1383 Target Full Sequence	2.0	Zea mays clone EL01N0413F08 mRNA sequence	NA	coding protein	psRNATarget
XM_008649302.2	ncRNA:23   ACUCACGGCUGCCGAAACGGCUC   1   **=**|*|||||||||||||||| targets:1540   ACGACGACGACGGCUUUGCCGAG   1562 Target Full Sequence	2.0	PREDICTED: Zea mays Small nuclear RNA activating complex (SNAPc) subunit SNAP43 protein (pco140565), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT040310.1	ncRNA:23   ACUCACGGCUGCCGAAACGGCUC   1   **=**|*|||||||||||||||| targets:1590   ACGACGACGACGGCUUUGCCGAG   1612 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0080H15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147591.1	ncRNA:23   ACUCACGGCUGCCGAAACGGCUC   1   **=**|*|||||||||||||||| targets:1590   ACGACGACGACGGCUUUGCCGAG   1612 Target Full Sequence	2.0	Zea mays Small nuclear RNA activating complex (SNAPc) subunit SNAP43 protein (pco140565), mRNA	NA	coding protein	psRNATarget