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BaseInfo

ncRNA ID	novel_zma_miR3709
Species	Zea mays
Class	miRNA
Genome position	Chr2:231149857-231149997 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287160;SRR2287162;SRR2287163;SRR2287165
Length	21
Mature sequence(if miRNA)	1 - UAUAAGUUGGAUUAUGAUGGA - 21
Stem-loop(if miRNA)	--               GA      AU A  -   -        A  -  ---AAA      U   --C    CU   UAUAAGUUGGAUUAU  UGGAAG  U GG AAG UAAAAUAU AC CU      AUAAGU AUC   AAUA  A   |||||||||||||||  ||||||  | || ||| |||||||| || ||      |||||| |||   ||||   AUAUUUAAUCUAAUA  AUCUUC  A CC UUC AUUUUAUA UG GA      UAUUUA UAG   UUAU  G AU               AC      CU -  A   C        G  A  CUCGGG      U   ACU    UU
Stem-loop sequence	UAUAAGUUGGAUUAUGAUGGAAGAUUAGGAAGUAAAAUAUAACCUAAAAUAAGUUAUCCAAUACUAGUUUAUUUCAGAUUAUUUAUGGGCUCAGAGUGAUAUUUUACCUUACCAUCCUUCUACAAUAAUCUAAUUUAUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541956.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |||||=||||||||||||||| targets:664   UCCAUUAUAAUCCAACUUAUA   684 Target Full Sequence	1.0	PREDICTED: Zea mays U-box domain-containing protein 33-like (LOC109941340), mRNA	NA	coding protein	psRNATarget
XM_008660268.2	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |==||=||||||||||||||| targets:3071   UUUAUUAUAAUCCAACUUAUA   3091 Target Full Sequence	2.0	PREDICTED: Zea mays WW domain-containing protein (LOC100279861), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU975471.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |=||*|||||||||||||||| targets:810   UUCACCAUAAUCCAACUUAUA   830 Target Full Sequence	1.0	Zea mays clone 490696 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174540.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   *==|||||||||||||||||= targets:2043   GUUAUCAUAAUCCAACUUAUG   2063 Target Full Sequence	2.0	Zea mays putative sphingolipid transporter spinster homolog 2 (LOC100381734), mRNA	NA	coding protein	psRNATarget
BT062131.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   *==|||||||||||||||||= targets:2043   GUUAUCAUAAUCCAACUUAUG   2063 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0217D24 mRNA, complete cds	NA	coding protein	psRNATarget
EU948770.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   *==|||||||||||||||||= targets:813   GUUAUCAUAAUCCAACUUAUG   833 Target Full Sequence	2.0	Zea mays clone 384422 mRNA sequence	NA	coding protein	psRNATarget
AY107822.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   *==|||||||||||||||||= targets:298   GUUAUCAUAAUCCAACUUAUG   318 Target Full Sequence	2.0	Zea mays PCO087182 mRNA sequence	NA	coding protein	psRNATarget
XM_008656975.2	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |=||*||||||=||||||||| targets:1367   UUCAGCAUAAUUCAACUUAUA   1387 Target Full Sequence	2.5	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA	NA	coding protein	psRNATarget
XM_008645727.2	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |=||*|||||||||=|||||| targets:3874   UUCACCAUAAUCCAGCUUAUA   3894 Target Full Sequence	2.5	PREDICTED: Zea mays Translocase of chloroplast 159 chloroplastic (LOC100381654), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU949360.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |=||*||||||=||||||||| targets:1373   UUCAGCAUAAUUCAACUUAUA   1393 Target Full Sequence	2.5	Zea mays clone 403134 mRNA sequence	NA	coding protein	psRNATarget
NM_001319711.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |=||*||||||=||||||||| targets:2446   UUCACCAUAAUUCAACUUAUA   2466 Target Full Sequence	2.5	Zea mays protein LUTEIN DEFICIENT 5, chloroplastic (LOC103627895), mRNA	NA	coding protein	psRNATarget
EU956753.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |=||*||||||=||||||||| targets:2446   UUCACCAUAAUUCAACUUAUA   2466 Target Full Sequence	2.5	Zea mays clone 1572652 cytochrome P450 CYP97A16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139196.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |*||*|||||||||||||||| targets:1077   UACACCAUAAUCCAACUUAUA   1097 Target Full Sequence	1.0	Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA	NA	coding protein	psRNATarget
BT036602.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   |*||*|||||||||||||||| targets:1077   UACACCAUAAUCCAACUUAUA   1097 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds	NA	coding protein	psRNATarget
BT054221.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   ||||*|||||*|||||||||| targets:1014   UCCACCAUAACCCAACUUAUA   1034 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0178P02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152434.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   ||||*|||||*|||||||||| targets:1014   UCCACCAUAACCCAACUUAUA   1034 Target Full Sequence	2.5	Zea mays FIP1 (LOC100279424), mRNA	NA	coding protein	psRNATarget
EU965413.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   ||*|||||||||||||*|||| targets:380   UCGAUCAUAAUCCAACCUAUA   400 Target Full Sequence	2.5	Zea mays clone 285855 mRNA sequence	NA	coding protein	psRNATarget
AY112124.1	ncRNA:21   AGGUAGUAUUAGGUUGAAUAU   1   **||*|||||||=|||||||| targets:31   NNCACCAUAAUCUAACUUAUA   51 Target Full Sequence	2.5	Zea mays CL27759_1 mRNA sequence	NA	coding protein	psRNATarget