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BaseInfo

ncRNA ID novel_zma_miR3706
Species Zea mays
Class miRNA
Genome position Chr9:8985970-8986028 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 36 - CUAGGCUACAAAUAUAUUUUUUGU - 59
Stem-loop(if miRNA) --C         AA        -U      C
   UAGGCUACA  UAUAUUUU  UGUUUA U
   |||||||||  ||||||||  ||||||
   GUCUGGUGU  GUAUAGAA  ACAAAU U
GUC         --        UC      C
Stem-loop sequence CUAGGCUACAAAUAUAUUUUUUGUUUACUUCUAAACACUAAGAUAUGUGUGGUCUGCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU963677.1
ncRNA:24   UGUUUUUUAUAUAAACAUCGGAUC   1
  **|=|||=|||||||*||||||||
targets:1513   UAAGAAAGUAUAUUUAUAGCCUAG   1536

2.5 Zea mays clone 265680 CCT motif family protein mRNA, complete cds NA coding protein psRNATarget
NM_001156076.1
ncRNA:24   UGUUUUUUAUAUAAACAUCGGAUC   1
  **|=|||=|||||||*||||||||
targets:1513   UAAGAAAGUAUAUUUAUAGCCUAG   1536

2.5 Zea mays CCT motif family protein (COL8), mRNA NA coding protein psRNATarget
EZ112850.1
ncRNA:24   UGUUUUUUAUAUAAACAUCGGAUC   1
  **|=|||=|||||||*||||||||
targets:30   UAAGAAAGUAUAUUUAUAGCCUAG   53

2.5 TSA: Zea mays contig48511, mRNA sequence NA coding protein psRNATarget
XM_020545305.1
ncRNA:24   UGUU-UUUUAUAUAAACAUCGGAUC   1
  *=|=-=|||||||||||||*||||*
targets:1854   CUAGUGAAAUAUAUUUGUACCCUAU   1878

2.5 PREDICTED: Zea mays uncharacterized LOC103642340 (LOC103642340), mRNA NA coding protein psRNATarget