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BaseInfo

ncRNA ID novel_zma_miR3703
Species Zea mays
Class miRNA
Genome position Chr2:183501175-183501262 [+]
Reference genome RefGen_v4
Source SRR2287031
Length 24
Mature sequence(if miRNA) 65 - GAGCAAAAACACGACUAAGGGUAU - 88
Stem-loop(if miRNA) --                  U   A              -  UCU
  ACCCUUAGUCGUGUUUUU GCU AGUUUUGCCCUUCU GU   A
  |||||||||||||||||| ||| |||||||||||||| ||
  UGGGAAUCAGCACAAAAA CGA UCAAAACGGGAAGG CA   U
UA                  -   G              U  CAA
Stem-loop sequence ACCCUUAGUCGUGUUUUUUGCUAAGUUUUGCCCUUCUGUUCUAUAACACUGGAAGGGCAAAACUGAGCAAAAACACGACUAAGGGUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ076008.1
ncRNA:24   UAUGGGAAUCAGCACAAAAA-CGAG   1
  ||||||||||||||||||||-||||
targets:47   AUACCCUUAGUCGUGUUUUUUGCUC   71

3.0 TSA: Zea mays contig11645, mRNA sequence NA coding protein psRNATarget
NM_001138790.2
ncRNA:24   UAUGGGAAUCAGCACAAAAA-CGAG   1
  ||||||||||||||||||||-||||
targets:880   AUACCCUUAGUCGUGUUUUUUGCUC   904

3.0 Zea mays uncharacterized LOC100193698 (LOC100193698), mRNA NA coding protein psRNATarget
BT036033.2
ncRNA:24   UAUGGGAAUCAGCACAAAAA-CGAG   1
  ||||||||||||||||||||-||||
targets:880   AUACCCUUAGUCGUGUUUUUUGCUC   904

3.0 Zea mays full-length cDNA clone ZM_BFb0092L19 mRNA, complete cds NA coding protein psRNATarget
BT062450.2
ncRNA:24   UAUGGGAAUCAGCACAAAAACGAG   1
  *||=||||||||||||||||*|||
targets:377   UUAUCCUUAGUCGUGUUUUUUCUC   400

1.5 Zea mays full-length cDNA clone ZM_BFb0299A08 mRNA, complete cds NA coding protein psRNATarget