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BaseInfo

ncRNA ID novel_zma_miR3702
Species Zea mays
Class miRNA
Genome position Chr10:60810907-60811054 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR2287159
Length 24
Mature sequence(if miRNA) 125 - ACUCUUAGGGCUUGUUCGGUUAUU - 148
Stem-loop(if miRNA) ---A         -           -AU              G     AGA       UACGGAUU     AACUUACU
    CUCUUAGGG CUUGUUCGGUU   UUUCAAUCCAUAUA AUUGG   GGAUUGG        GGGAG        A
    ||||||||| |||||||||||   |||||||||||||| |||||   |||||||        |||||        G
    GGGAGUUCU GAACAAGCCAA   GAGGUUAGGUAUAU UAACU   UCUAGCU        CCCUC        A
UGUA         U           GAU              A     CAC       --------     AAAGUUAA
Stem-loop sequence ACUCUUAGGGCUUGUUCGGUUAUUUUCAAUCCAUAUAGAUUGGAGAGGAUUGGUACGGAUUGGGAGAACUUACUAGAAAUUGAAACUCCCUCGAUCUCACUCAAUAUAUAUGGAUUGGAGUAGAACCGAACAAGUUCUUGAGGGAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064472.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||=|*
targets:1450   AAUAACCGAACAAGCCCUAAGGGG   1473

2.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||=|*
targets:1494   AAUAACCGAACAAGCCCUAAGGGG   1517

2.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||=|*
targets:1512   AAUAACCGAACAAGCCCUAAGGGG   1535

2.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||=|*
targets:1526   AAUAACCGAACAAGCCCUAAGGGG   1549

2.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||=|*
targets:1526   AAUAACCGAACAAGCCCUAAGGGG   1549

2.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
JB167351.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  ||||||||||||||||||||*|||
targets:134   AAUAACCGAACAAGCCCUAAUAGU   157

1.5 Sequence 5015 from Patent EP2559767 NA coding protein psRNATarget
HI406890.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  ||||||||||||||||||||*|||
targets:134   AAUAACCGAACAAGCCCUAAUAGU   157

1.5 Sequence 5015 from Patent EP2074227 NA coding protein psRNATarget
LQ239020.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  ||||||||||||||||||||*|||
targets:134   AAUAACCGAACAAGCCCUAAUAGU   157

1.5 Sequence 5015 from Patent EP2985353 NA coding protein psRNATarget
EU968099.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*||
targets:255   AAUAACCGAACAAGCCCUAAGUGU   278

1.5 Zea mays clone 314232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008681684.2
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  ||||||||||||||||||||*|||
targets:2918   AAUAACCGAACAAGCCCUAAUAGU   2941

1.5 PREDICTED: Zea mays pyrophosphate-energized vacuolar membrane proton pump (LOC103654862), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  ||||||||||||||||||||*||*
targets:1189   AAUAACCGAACAAGCCCUAACAGG   1212

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
BT055467.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  ||||||||||||||||||||*||*
targets:1227   AAUAACCGAACAAGCCCUAACAGG   1250

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:2009   AAUAACCGAACAAGCCCUAAGUGG   2032

2.5 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:2009   AAUAACCGAACAAGCCCUAAGUGG   2032

2.5 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:3716   AAUAACCGAACAAGCCCUAAGUGG   3739

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:3740   AAUAACCGAACAAGCCCUAAGUGG   3763

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:3794   AAUAACCGAACAAGCCCUAAGUGG   3817

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:3788   AAUAACCGAACAAGCCCUAAGUGG   3811

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:3796   AAUAACCGAACAAGCCCUAAGUGG   3819

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:3783   AAUAACCGAACAAGCCCUAAGUGG   3806

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:3858   AAUAACCGAACAAGCCCUAAGUGG   3881

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:4182   AAUAACCGAACAAGCCCUAAGUGG   4205

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  |||||||||||||||||||||*|*
targets:4278   AAUAACCGAACAAGCCCUAAGUGG   4301

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238074.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=|||||||||||||||||||=|*
targets:117   CGUAACCGAACAAGCCCUAAGGGA   140

2.5 Sequence 4069 from Patent EP2985353 NA coding protein psRNATarget
JB166405.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=|||||||||||||||||||=|*
targets:117   CGUAACCGAACAAGCCCUAAGGGA   140

2.5 Sequence 4069 from Patent EP2559767 NA coding protein psRNATarget
HI405947.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=|||||||||||||||||||=|*
targets:117   CGUAACCGAACAAGCCCUAAGGGA   140

2.5 Sequence 4072 from Patent EP2074227 NA coding protein psRNATarget
HI405944.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=|||||||||||||||||||=|*
targets:117   CGUAACCGAACAAGCCCUAAGGGA   140

2.5 Sequence 4069 from Patent EP2074227 NA coding protein psRNATarget
LQ238077.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=|||||||||||||||||||=|*
targets:117   CGUAACCGAACAAGCCCUAAGGGA   140

2.5 Sequence 4072 from Patent EP2985353 NA coding protein psRNATarget
JB166408.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=|||||||||||||||||||=|*
targets:117   CGUAACCGAACAAGCCCUAAGGGA   140

2.5 Sequence 4072 from Patent EP2559767 NA coding protein psRNATarget
NM_001156517.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=||||||||||||=||||||||*
targets:1174   UGUAACCGAACAAGUCCUAAGAGA   1197

2.5 Zea mays PRKR interacting protein 1 (cl40218_1), mRNA NA coding protein psRNATarget
EU965297.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=||||||||||||=||||||||*
targets:1174   UGUAACCGAACAAGUCCUAAGAGA   1197

2.5 Zea mays clone 285080 PRKR interacting protein 1 mRNA, complete cds NA coding protein psRNATarget
BT054119.1
ncRNA:24   UUAUUGGCUUGUUCGGGA-UUCUCA   1
  **||||||||||||||||-||||||
targets:469   UCUAACCGAACAAGCCCUUAAGAGU   493

3.0 Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds NA coding protein psRNATarget
NM_001153140.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=||||||||||||||||||||**
targets:1640   UGUAACCGAACAAGCCCUAAGAUG   1663

2.5 Zea mays uncharacterized LOC100280209 (LOC100280209), mRNA NA coding protein psRNATarget
BT055781.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=||||||||||||||||||||**
targets:1640   UGUAACCGAACAAGCCCUAAGAUG   1663

2.5 Zea mays full-length cDNA clone ZM_BFb0185O06 mRNA, complete cds NA coding protein psRNATarget
BT061569.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=||||||||||||||||||||**
targets:1829   UGUAACCGAACAAGCCCUAAGAUG   1852

2.5 Zea mays full-length cDNA clone ZM_BFb0159M03 mRNA, complete cds NA coding protein psRNATarget
JB167257.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=||||||||||||||||||*||*
targets:123   UGUAACCGAACAAGCCCUAAAAGG   146

2.5 Sequence 4921 from Patent EP2559767 NA coding protein psRNATarget
HI406796.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=||||||||||||||||||*||*
targets:123   UGUAACCGAACAAGCCCUAAAAGG   146

2.5 Sequence 4921 from Patent EP2074227 NA coding protein psRNATarget
LQ238926.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  *=||||||||||||||||||*||*
targets:123   UGUAACCGAACAAGCCCUAAAAGG   146

2.5 Sequence 4921 from Patent EP2985353 NA coding protein psRNATarget
BT018903.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  =*|||||||||||||||||||*|*
targets:2062   GCUAACCGAACAAGCCCUAAGUGG   2085

2.5 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   UUAUUGGCUUGUUCGGGAUUCUCA   1
  =*||||||||||||||||||*||*
targets:5837   GCUAACCGAACAAGCCCUAAUAGG   5860

2.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
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