| ncRNA ID | osa-miR1875 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr9:17567947-17568198 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 10 - ACAAUGGAGUGAAGUGCAACAGAA - 33 |
| Stem-loop(if miRNA) |
GC C CA UG A ACAUU A AACG C A C C UG UG --AU UUAAC CU -- U UGU CAUUUU UUGCACUU CUCCAUUGUGGU UUG CUGCA G AGUC C GUAUCAAGU ACUGUUA GGUGU U GUACC UGA AUAACA UGAC GGCCA A ||| |||||| |||||||| |||||||||||| ||| ||||| | |||| | ||||||||| ||||||| ||||| | ||||| ||| |||||| |||| ||||| ACA GUAAAG AACGUGAA GAGGUAACACCA AGC GACGU C UCAG G CAUAGUUUA UGACAAU UCACG G CAUGG ACU UAUUGU GUUG CUGGU C UU A AC GU A GAGUU - -GGA U A U U GU UA AGAC UCGAC AU UA U |
| Stem-loop sequence | GCUGUCCAUUUUCAUUGCACUUUGCUCCAUUGUGGUAUUGACAUUCUGCAAGAACGAGUCCCAGUAUCAAGUCACUGUUACGGUGUUGUUGGUACCAUUGAUUAACAUAACACUUGACGGCCAUACUUGGUCAUGUUGUAUGUUAUCAGCUUCACAGAGGUACAUGUGGCACUUUAACAGUUAUUUGAUACAGUGACUAGGCUGCAGUUGAGCGAAACCACAAUGGAGUGAAGUGCAACAGAAAUGAACAUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK289051.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J090092O18, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |