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BaseInfo

ncRNA ID	novel_zma_miR3694
Species	Zea mays
Class	miRNA
Genome position	Chr1:91627912-91628119 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287161;SRR1997865;SRR1997866
Length	24
Mature sequence(if miRNA)	185 - GUUCAGGAUCUAGAAAGUGACGGA - 208
Stem-loop(if miRNA)	--         A     G      -  C                 A              C                   UA         A  C   CCACAGC   CGUCACUUU UAGAU CUGAGC CU AUGGACAACUUUAUCUU UUUCGCACGUAAUC UAAUGAUACUCAGAUUCUC  CACAGCCAG UU UCC       U   ||||||||| ||||| |||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||  ||||||||| || |||   GCAGUGAAA AUCUA GACUUG GA UACUUGUUGAAAUAGAA GAGGUGUGCAUUAG AUUACUAUGAGUCUAAGAG  GUGUCGGUC AA AGG       A AG         G     G      A  -                 G              C                   GG         G  A   CUCUUAG
Stem-loop sequence	CGUCACUUUAUAGAUGCUGAGCCUCAUGGACAACUUUAUCUUAUUUCGCACGUAAUCCUAAUGAUACUCAGAUUCUCUACACAGCCAGAUUCUCCCCACAGCUAGAUUCUCGGAAAAGCUGGCUGUGGGGAGAAUCUGAGUAUCAUUACGAUUACGUGUGGAGGAAGAUAAAGUUGUUCAUAGAGUUCAGGAUCUAGAAAGUGACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU963449.1	ncRNA:24   AGGCAGUGAAAGAUCUAGGACUUG   1   ||||||||||||||||||||||=| targets:635   UCCGUCACUUUCUAGAUCCUGAGC   658 Target Full Sequence	1.5	Zea mays clone 262668 mRNA sequence	NA	coding protein	psRNATarget
BT087362.1	ncRNA:24   AGGCAGUGAAAGAUCUAGGACUUG   1   ||||||||||||||||||||||=| targets:1128   UCCGUCACUUUCUAGAUCCUGAGC   1151 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0054C12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177007.2	ncRNA:24   AGGCAGUGAAAGAUCUAGGACUUG   1   ||||||||||||||||||||||=| targets:2355   UCCGUCACUUUCUAGAUCCUGAGC   2378 Target Full Sequence	1.5	Zea mays calcium dependent protein kinase4 (IDP2562), mRNA	NA	coding protein	psRNATarget
FJ805744.1	ncRNA:24   AGGCAGUGAAAGAUCUAGGACUUG   1   ||||||||||||||||||||||=| targets:2355   UCCGUCACUUUCUAGAUCCUGAGC   2378 Target Full Sequence	1.5	Zea mays CDPK protein (CK1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_008677133.2	ncRNA:24   AGGCAGUGAAAGAUCUAGGACUUG   1   |=|*||||||||||||||||||=| targets:2213   UUCAUCACUUUCUAGAUCCUGAGC   2236 Target Full Sequence	1.5	PREDICTED: Zea mays phosphoglucomutase, chloroplastic (LOC103651489), mRNA	NA	coding protein	psRNATarget