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BaseInfo

ncRNA ID	novel_zma_miR3692
Species	Zea mays
Class	miRNA
Genome position	Chr1:65446087-65446194 [+]
Reference genome	RefGen_v4
Source	SRR2287031
Length	24
Mature sequence(if miRNA)	85 - GUAGCAACGUACGGUCAUAUAACU - 108
Stem-loop(if miRNA)	--G      UU              AA             CAU   UC     GC    UAUAUG  CGUGCGUUGCUACG  AUUAAUAUGAUAA   ACA  AAUAU  A    ||||||  ||||||||||||||  |||||||||||||   |||  |||||  A    AUAUAC  GCAUGCAACGAUGU  UAGUUAUAUUAUU   UGU  UUAUA  A UCA      UG              CC             --U   -U     AA
Stem-loop sequence	GUAUAUGUUCGUGCGUUGCUACGAAAUUAAUAUGAUAACAUACAUCAAUAUGCAAAAAAUAUUUUGUUUUAUUAUAUUGAUCCUGUAGCAACGUACGGUCAUAUAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165433.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*||||||*||||=||||||||| targets:584   AGGUAUAUGCCCGUGCGUUGCUAC   607 Target Full Sequence	2.5	Zea mays AtS40-3 (LOC100303799), mRNA	NA	coding protein	psRNATarget
BT040517.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*||||||*||||=||||||||| targets:584   AGGUAUAUGCCCGUGCGUUGCUAC   607 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0098J20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157052.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*||||||*||||=||||||||| targets:660   AGGUAUAUGCCCGUGCGUUGCUAC   683 Target Full Sequence	2.5	Zea mays nuclear protein (LOC100284155), mRNA	NA	coding protein	psRNATarget
EU967295.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*||||||*||||=||||||||| targets:660   AGGUAUAUGCCCGUGCGUUGCUAC   683 Target Full Sequence	2.5	Zea mays clone 301197 nuclear protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001352154.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*||||||*||||=||||||||| targets:1231   AGGUAUAUGCCCGUGCGUUGCUAC   1254 Target Full Sequence	2.5	Zea mays GDSL esterase/lipase At1g71691-like (LOC103628962), mRNA	NA	coding protein	psRNATarget
BT066590.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||||=*|||*|||||||||||||| targets:1493   AGUUGGAUGCCCGUACGUUGCUAC   1516 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0033I10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001318963.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||||=*|||*|||||||||||||| targets:1637   AGUUGGAUGCCCGUACGUUGCUAC   1660 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100383208), mRNA	NA	coding protein	psRNATarget
XM_008650156.2	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*||||||*||||=||||||||| targets:1998   AGGUAUAUGCCCGUGCGUUGCUAC   2021 Target Full Sequence	2.5	PREDICTED: Zea mays GDSL esterase/lipase At1g71691-like (LOC103628962), mRNA	NA	coding protein	psRNATarget
BT041253.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*|=||||*||||=||||||||| targets:222   AGGUGUAUGCCCGUGCGUUGCUAC   245 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0016P02 mRNA, complete cds	NA	coding protein	psRNATarget
BT016304.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*|=||||*||||=||||||||| targets:1069   AGGUGUAUGCCCGUGCGUUGCUAC   1092 Target Full Sequence	2.5	Zea mays clone Contig137 mRNA sequence	NA	coding protein	psRNATarget
BT065294.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*|=||||*||||=||||||||| targets:1159   AGGUGUAUGCCCGUGCGUUGCUAC   1182 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0085G10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678977.2	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*|=||||*||||=||||||||| targets:1212   AGGUGUAUGCCCGUGCGUUGCUAC   1235 Target Full Sequence	2.5	PREDICTED: Zea mays fasciclin-like arabinogalactan protein 7 (LOC100281475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001137820.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*|=||||*||||=||||||||| targets:965   AGGUGUAUGCCCGUGCGUUGCUAC   988 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192605 (LOC100192605), mRNA	NA	coding protein	psRNATarget
BT034628.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*|=||||*||||=||||||||| targets:965   AGGUGUAUGCCCGUGCGUUGCUAC   988 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0003O14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653251.2	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   ||*|=||||*||||=||||||||| targets:2013   AGGUGUAUGCCCGUGCGUUGCUAC   2036 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100283163 (pco077553), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537679.1	ncRNA:24   UCAAUAUACUGGCAUGCAACGAUG   1   |||-=||||*||||=||||||||| targets:797   AGU-GUAUGCCCGUGCGUUGCUAC   819 Target Full Sequence	2.5	PREDICTED: Zea mays probable ubiquitin-conjugating enzyme E2 25 (LOC103628268), mRNA	NA	coding protein	psRNATarget