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BaseInfo

ncRNA ID	novel_zma_miR3686
Species	Zea mays
Class	miRNA
Genome position	Chr1:19640691-19640758 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287162;SRR2287164;SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AAAAAGUACUCGGCAAAGAAGGUU - 24
Stem-loop(if miRNA)	CUGC                  ---  - U   UGC     UUUUCUUUGCCGAGUACU   UC C GGC   C     ||||||||||||||||||   || | |||     GGAAGAAACGGCUCAUGA   AG G CCG   G --UU                  AAA  A C   UGA
Stem-loop sequence	CUGCUUUUCUUUGCCGAGUACUUCCUGGCUGCCGAGUGCCCGAGAAAAAGUACUCGGCAAAGAAGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI407253.1	ncRNA:24   UUGGAAGAAACGGCUCAUGAAAAA   1   |=|||||||||||||||||||||| targets:30   AGCCUUCUUUGCCGAGUACUUUUU   53 Target Full Sequence	0.0	Sequence 5378 from Patent EP2074227	NA	coding protein	psRNATarget
JB167714.1	ncRNA:24   UUGGAAGAAACGGCUCAUGAAAAA   1   |=|||||||||||||||||||||| targets:30   AGCCUUCUUUGCCGAGUACUUUUU   53 Target Full Sequence	0.0	Sequence 5378 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239383.1	ncRNA:24   UUGGAAGAAACGGCUCAUGAAAAA   1   |=|||||||||||||||||||||| targets:30   AGCCUUCUUUGCCGAGUACUUUUU   53 Target Full Sequence	0.0	Sequence 5378 from Patent EP2985353	NA	coding protein	psRNATarget
EU974507.1	ncRNA:24   UUG--GAAGAAACGGCUCAUGAAAAA   1   |||--||||||||||||||||||||| targets:441   AACAGCUUCUUUGCCGAGUACUUUUU   466 Target Full Sequence	0.0	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU957858.1	ncRNA:24   UUG--GAAGAAACGGCUCAUGAAAAA   1   |||--|||*|||*||||||||||||| targets:1235   AACGGCUUAUUUACCGAGUACUUUUU   1260 Target Full Sequence	2.0	Zea mays clone 1627310 mRNA sequence	NA	coding protein	psRNATarget
XM_008645204.2	ncRNA:24   UUGG-AAGAAACGGCUCAUGAAAAA   1   ||=*-|||||||||*|||||||||| targets:3201   AAUAGUUCUUUGCCAAGUACUUUUU   3225 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553261.1	ncRNA:24   UUGG-AAGAAACGGCUCAUGAAAAA   1   ||=*-|||||||||*|||||||||| targets:3208   AAUAGUUCUUUGCCAAGUACUUUUU   3232 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645203.2	ncRNA:24   UUGG-AAGAAACGGCUCAUGAAAAA   1   ||=*-|||||||||*|||||||||| targets:3269   AAUAGUUCUUUGCCAAGUACUUUUU   3293 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA	NA	coding protein	psRNATarget