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BaseInfo

ncRNA ID	novel_zma_miR3682
Species	Zea mays
Class	miRNA
Genome position	Chr1:52166236-52166448 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2287165;SRR5451005
Length	21
Mature sequence(if miRNA)	1 - UGGAGGGGAUUGAGGGGCAUA - 21
Stem-loop(if miRNA)	--    G   U  UU     CC    -C   UC GG       ACA      GU       A A  UAC          -----------     A      C        CAA   UGCU UUU AU  CCUUC  UUCC  UGC  C  AAGUGGG   CUUAGG  UAGUUUG G GC   AAAAUCGGAA           GGCUA AAUUCC UUCUUAUU   U   |||| ||| ||  |||||  ||||  |||  |  |||||||   ||||||  ||||||| | ||   ||||||||||           ||||| |||||| ||||||||   ACGG GAG UA  GGAGG  AAGG  ACG  G  UUUAUUC   GAAUCC  AUUAAAC C CG   UUUUAGCCUU           CCGAU UUAGGG AAGAAUAA   U AU    G   U  GG     UU    AU   CU -A       --G      UG       C A  CUC          CUUUAACCUCC     C      U        AUU
Stem-loop sequence	UGCUGUUUUAUUUCCUUCCCUUCCCUGCUCCGGAAGUGGGACACUUAGGGUUAGUUUGAGAGCUACAAAAUCGGAAGGCUAAAAUUCCCUUCUUAUUCAAUUUUAAAUAAGAAUGGGAUUCUAGCCCCUCCAAUUUCUUCCGAUUUUCUCGCACCCAAAUUAGUCCUAAGGCUUAUUUAGUCGCAUAGGAAUUGGAGGGGAUUGAGGGGCAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235623.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*||||||||||||||||| targets:30   CAUCCCCCUCAAUCCCCUCCA   50 Target Full Sequence	1.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163954.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*||||||||||||||||| targets:30   CAUCCCCCUCAAUCCCCUCCA   50 Target Full Sequence	1.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*||||||||||||||||| targets:30   CAUCCCCCUCAAUCCCCUCCA   50 Target Full Sequence	1.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*|=||||||||||||||| targets:28   CAUUCUCCUCAAUCCCCUCCA   48 Target Full Sequence	2.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*|=||||||||||||||| targets:28   CAUUCUCCUCAAUCCCCUCCA   48 Target Full Sequence	2.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403355.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*|=||||||||||||||| targets:28   CAUUCUCCUCAAUCCCCUCCA   48 Target Full Sequence	2.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*||||||||||||||||= targets:3173   GAUCCCCCUCAAUCCCCUCCG   3193 Target Full Sequence	2.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   ||**||||||||||||||||| targets:8   UAGCCCCCUCAAUCCCCUCCA   28 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
NM_001349063.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*=|=|||||||||||||| targets:1642   AAUUUCUCUCAAUCCCCUCCA   1662 Target Full Sequence	3.0	Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA	NA	coding protein	psRNATarget
BT064254.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*=|=|||||||||||||| targets:1642   AAUUUCUCUCAAUCCCCUCCA   1662 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds	NA	coding protein	psRNATarget
BT067571.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*=|=|||||||||||||| targets:1629   AAUUUCUCUCAAUCCCCUCCA   1649 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649902.2	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   *||*=|=|||||||||||||| targets:1672   AAUUUCUCUCAAUCCCCUCCA   1692 Target Full Sequence	3.0	PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU973567.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||= targets:83   UUUCCCCCUCAAUCCCCUCCG   103 Target Full Sequence	2.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*|||||||||||||||=| targets:1796   UUUCCCCCUCAAUCCCCUCUA   1816 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||= targets:2148   UUUCCCCCUCAAUCCCCUCCG   2168 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY108800.1	ncRNA:21   AUACGGG-GAGUUAGGGGAGGU   1   ***||||-|||||||||||||| targets:779   CCAGCCCUCUCAAUCCCCUCCA   800 Target Full Sequence	3.0	Zea mays PCO127746 mRNA sequence	NA	coding protein	psRNATarget
XM_008645760.2	ncRNA:21   AUACGGG-GAGUUAGGGGAGGU   1   ***||||-|||||||||||||| targets:1466   CCAGCCCUCUCAAUCCCCUCCA   1487 Target Full Sequence	3.0	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661692.2	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X18, mRNA	NA	coding protein	psRNATarget
XM_008661691.2	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X17, mRNA	NA	coding protein	psRNATarget
XM_008661689.2	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020544136.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020544139.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X16, mRNA	NA	coding protein	psRNATarget
XM_020544133.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020544131.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020544137.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020544135.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020544134.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020544132.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020544126.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544125.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544130.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020544127.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544129.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*||||||||||||||||* targets:2260   UUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU966099.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*==||||||||||||||| targets:635   UCUUUUCCUCAAUCCCCUCCA   655 Target Full Sequence	3.0	Zea mays clone 291725 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT088155.1	ncRNA:21   AUACGGGGAGUUAGGGGAGGU   1   |*|*=|=|||||||||||||| targets:1461   UUUCUCUCUCAAUCCCCUCCA   1481 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget