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BaseInfo

ncRNA ID osa-miR166l-5p
Species Oryza sativa
Class miRNA
Genome position Chr9:16951817-16951933 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 13 - GGAUUGUUGUCUGGUUCAAGG - 33
Stem-loop(if miRNA) -   A              UU         A     U   --   --     -AAA   UU
 GUU GGUUAAGGGGAUUG  GUCUGGUUC AGGUC CCA  CAU  UGUGC    AUG  C
 ||| ||||||||||||||  ||||||||| ||||| |||  |||  |||||    |||
 CGA CCAAUUUCCCUAAC  CGGACCAGG UCUAG GGU  GUA  ACACG    UAC  A
A   -              UU         C     U   UC   GG     GAGG   UU
Stem-loop sequence GUUAGGUUAAGGGGAUUGUUGUCUGGUUCAAGGUCUCCACAUUGUGCAAAAUGUUCAUUCAUGGAGGCACAGGAUGCUUGGUGAUCUCGGACCAGGCUUCAAUCCCUUUAACCAGCA

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).