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BaseInfo

ncRNA ID novel_zma_miR3674
Species Zea mays
Class miRNA
Genome position Chr1:148361091-148361205 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR2287165
Length 24
Mature sequence(if miRNA) 1 - CCUUCUUUUUGUGAGGGGCUGUAA - 24
Stem-loop(if miRNA) --                    A    U U           -GU    -----   G   U
  GCAGCCCCUCACAAAAAGGA GAUA G CCCACCUGCAG   CGAC     CAG UAA G
  |||||||||||||||||||| |||| | |||||||||||   ||||     ||| |||
  UGUCGGGGAGUGUUUUUCUU CUAU C GGGUGGGCGUC   GUUG     GUU AUU U
AA                    C    - U           GUC    UUGUU   G   U
Stem-loop sequence GCAGCCCCUCACAAAAAGGAAGAUAUGUCCCACCUGCAGGUCGACCAGGUAAUGUUUUAGUUGUUGUUGUUGCUGCUGCGGGUGGGUCUAUCCUUCUUUUUGUGAGGGGCUGUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
X55314.1
ncRNA:24   AAUGUCGGGGAGUGUUUUUCUUCC   1
  ||=|||||||||||||||||=|||
targets:917   UUGCAGCCCCUCACAAAAAGGAGG   940

1.5 Zea mays A2 gene NA coding protein psRNATarget
JB170491.1
ncRNA:24   AAUGUCGGGGAGUGUUUUUCUUCC   1
  ||=||*=|||||||||||||||||
targets:1   UUGCAUUCCCUCACAAAAAGAAGG   24

2.0 Sequence 8155 from Patent EP2559767 NA coding protein psRNATarget
LQ242160.1
ncRNA:24   AAUGUCGGGGAGUGUUUUUCUUCC   1
  ||=||*=|||||||||||||||||
targets:1   UUGCAUUCCCUCACAAAAAGAAGG   24

2.0 Sequence 8155 from Patent EP2985353 NA coding protein psRNATarget
HI410030.1
ncRNA:24   AAUGUCGGGGAGUGUUUUUCUUCC   1
  ||=||*=|||||||||||||||||
targets:1   UUGCAUUCCCUCACAAAAAGAAGG   24

2.0 Sequence 8155 from Patent EP2074227 NA coding protein psRNATarget