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BaseInfo

ncRNA ID	osa-miR166l-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:16951817-16951933 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	87 - UCGGACCAGGCUUCAAUCCCU - 107
Stem-loop(if miRNA)	-   A              UU         A     U   --   --     -AAA   UU  GUU GGUUAAGGGGAUUG  GUCUGGUUC AGGUC CCA  CAU  UGUGC    AUG  C  ||| ||||||||||||||  ||||||||| ||||| |||  |||  |||||    |||  CGA CCAAUUUCCCUAAC  CGGACCAGG UCUAG GGU  GUA  ACACG    UAC  A A   -              UU         C     U   UC   GG     GAGG   UU
Stem-loop sequence	GUUAGGUUAAGGGGAUUGUUGUCUGGUUCAAGGUCUCCACAUUGUGCAAAAUGUUCAUUCAUGGAGGCACAGGAUGCUUGGUGAUCUCGGACCAGGCUUCAAUCCCUUUAACCAGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288397.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =*|||*|||||||||*||||| targets:1245   GAGGAAUGAAGCCUGAUCCGA   1265 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090028B18, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).