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BaseInfo

ncRNA ID novel_zma_miR3669
Species Zea mays
Class miRNA
Genome position Chr1:185832875-185833010 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR2287164
Length 24
Mature sequence(if miRNA) 1 - AUGGUUUAUAUGGUUGAGGGCGCA - 24
Stem-loop(if miRNA) --CA                                                               U
    CCCUCAACCAUAUAAACCAUGCUUUUCCACUCUCACCAGACAAUGUGAGACUAUUCCCAACAA U
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    GGGAGUUGGUAUAUUUGGUACGAAAAGGUGAGAGUGGUCUGUUACACUCUGAUAAGGGUUGUU A
ACGC                                                               A
Stem-loop sequence CACCCUCAACCAUAUAAACCAUGCUUUUCCACUCUCACCAGACAAUGUGAGACUAUUCCCAACAAUUAAUUGUUGGGAAUAGUCUCACAUUGUCUGGUGAGAGUGGAAAAGCAUGGUUUAUAUGGUUGAGGGCGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ057835.1
ncRNA:24   ACGCGGGAGUUGGUAUAUUUGGUA   1
  |||*|||||||||*||||||||||
targets:375   UGCACCCUCAACCUUAUAAACCAU   398

1.5 TSA: Zea mays contig58957, mRNA sequence NA coding protein psRNATarget
EU977016.1
ncRNA:24   ACGCGGGAGUUGGUAUAUUUGGUA   1
  |||*||||||||||||||||||*|
targets:483   UGCACCCUCAACCAUAUAAACCUU   506

1.5 Zea mays clone 996415 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU977016.1
ncRNA:24   ACGCGGGAGUUGGUAUAUUUGGUA   1
  |||*||||||||||||||||||*|
targets:787   UGCACCCUCAACCAUAUAAACCUU   810

1.5 Zea mays clone 996415 hypothetical protein mRNA, complete cds NA coding protein psRNATarget