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BaseInfo

ncRNA ID novel_zma_miR3665
Species Zea mays
Class miRNA
Genome position Chr10:104481112-104481231 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR2287159;SRR1997865
Length 24
Mature sequence(if miRNA) 1 - GAAAAUAUGCUAUUUUCGUCGGUU - 24
Stem-loop(if miRNA) --             G   -       C    --             G    UAUUUUCGUC
  CCGACGAAAAUAG UAU UUUUCGU GGUA  CCGACGGAAAUAG UGCC          G
  ||||||||||||| ||| ||||||| ||||  ||||||||||||| ||||
  GGCUGCUUUUAUC GUA AAAAGCG CCGU  GGCUGCUUUUAUC GCGG          A
UU             -   U       A    CC             G    CUUUUAUUCA
Stem-loop sequence CCGACGAAAAUAGGUAUUUUUCGUCGGUACCGACGGAAAUAGGUGCCUAUUUUCGUCGAACUUAUUUUCGGCGGCUAUUUUCGUCGGCCUGCCAGCGAAAAUAUGCUAUUUUCGUCGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008652081.2
ncRNA:24   UUGGCUGCUUUUAUCGUAUAAAAG   1
  |=*=*|||||*|||||||||||||
targets:592   AGAUAACGAACAUAGCAUAUUUUC   615

1.0 PREDICTED: Zea mays ADP-ribosylation factor GTPase-activating protein AGD7 (LOC103631077), mRNA NA coding protein psRNATarget