Search result

BaseInfo

ncRNA ID novel_zma_miR3664
Species Zea mays
Class miRNA
Genome position Chr1:230713642-230713751 [-]
Reference genome RefGen_v4
Source SRR2287031
Length 24
Mature sequence(if miRNA) 87 - AAUUGAAUAAGGAGAGGAUUUUAG - 110
Stem-loop(if miRNA) --AA              G       C C  CA      C       C      U
    UUGAAUAAGGAGAG AUUUUAG C CU  AAUCCC UCCGGUU UGUGGC G
    |||||||||||||| ||||||| | ||  |||||| ||||||| |||||| G
    AAUUUAUUCUUCUU UAAAAUC G GA  UUAGGG AGGCUAA ACACUG C
UUAA              G       A U  AG      -       A      A
Stem-loop sequence AAUUGAAUAAGGAGAGGAUUUUAGCCCCUCAAAUCCCCUCCGGUUCUGUGGCUGGCAGUCACAAAAUCGGAGGGAUUGAAGUGACUAAAAUGUUCUUCUUAUUUAAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008662350.2
ncRNA:24   GAUUUUAGGAGAGGAAUAAGUUAA   1
  |||||||||*|||=||||||||||
targets:5241   CUAAAAUCCCCUCUUUAUUCAAUU   5264

2.5 PREDICTED: Zea mays paramyosin (LOC103639615), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008664337.2
ncRNA:24   GAUUUUAGGAGAGGAAUAAGUUAA   1
  |||=|||||*||=|||||||||||
targets:2049   CUAGAAUCCCCUUCUUAUUCAAUU   2072

2.5 PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA NA coding protein psRNATarget