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BaseInfo

ncRNA ID osa-miR1878
Species Oryza sativa
Class miRNA
Genome position Chr9:16555509-16555608 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - ACUUAAUCUGGACACUAUAAAAGA - 34
Stem-loop(if miRNA) --    CUG -                       AGAAAAU  U      G
  ACCA   C AGACUUAAUCUGGACACUAUAAA       UG GCAUGU A
  ||||   | |||||||||||||||||||||||       || ||||||
  UGGU   G UUUGAGUUAGACUUGUGAUGUUU       AC CGUAUA A
GU    -AA A                       AAAUAUU  C      A
Stem-loop sequence ACCACUGCAGACUUAAUCUGGACACUAUAAAAGAAAAUUGUGCAUGUGAAAAUAUGCCCAUUAUAAAUUUGUAGUGUUCAGAUUGAGUUUAGAAUGGUUG

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).