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BaseInfo

ncRNA ID novel_zma_miR3648
Species Zea mays
Class miRNA
Genome position Chr1:232640721-232640784 [+]
Reference genome RefGen_v4
Source SRR2287031
Length 20
Mature sequence(if miRNA) 45 - UGCGCGCCACGUCAGUGCAA - 64
Stem-loop(if miRNA) --CU       A   -A             - A
    GCUGGCG UGG  CGCACCGGACAGU C C
    ||||||| |||  ||||||||||||| | U
    UGACUGC ACC  GCGUGGCCUGUCA G G
AACG       -   GC             C U
Stem-loop sequence CUGCUGGCGAUGGACGCACCGGACAGUCACUGUGCACUGUCCGGUGCGCGCCACGUCAGUGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541939.1
ncRNA:20   AACGUGACUGCACCGCGCGU   1
  ||||=|||||||||||||||
targets:1215   UUGCGCUGACGUGGCGCGCA   1234

1.0 PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541938.1
ncRNA:20   AACGUGACUGCACCGCGCGU   1
  ||||=|||||||||||||||
targets:1228   UUGCGCUGACGUGGCGCGCA   1247

1.0 PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X1, mRNA NA coding protein psRNATarget