ncRNA ID | novel_zma_miR3647 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr9:42703263-42703481 [-] |
Reference genome | RefGen_v4 |
Source | SRR1583944;SRR2638137;SRR2647387;SRR2647388;SRR2647391 |
Length | 23 |
Mature sequence(if miRNA) | 197 - AAUGAUCUCCAGUUUUUACGCAG - 219 |
Stem-loop(if miRNA) |
--        C                                   C                 G   U  A          A     A   -------G        --G      AAUGAUCU CAGUUUUUACGCAGACCUUCUCUUAGCUAAAUUAA AUAUAUAAAUAUUUUCA AAU UU UGAGAACUUU AAUCU GAA        UAUAUAAA   UUCU   |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||| ||||| |||        ||||||||   |||G   UUACUAGA GUUAAAAAUGUGUUUGGAAGAGAAUCGAUUUAAUU UAUGUGUUUAUAAAAGU UUA AA ACUCUUGAAA UUAGA CUU        AUGUAUUU   AAGA UU        A                                   A                 A   U  A          C     -   GGUAUUAA        AUA    |
Stem-loop sequence | AAUGAUCUCCAGUUUUUACGCAGACCUUCUCUUAGCUAAAUUAACAUAUAUAAAUAUUUUCAGAAUUUUAUGAGAACUUUAAAUCUAGAAGUAUAUAAAGUUCUGAGAAAUAUUUAUGUAAAUUAUGGUUCAGAUUCAAAGUUCUCAAAAUAUUAUGAAAAUAUUUGUGUAUAUUAAUUUAGCUAAGAGAAGGUUUGUGUAAAAAUUGAAGAUCAUUUU |