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BaseInfo

ncRNA ID novel_zma_miR3646
Species Zea mays
Class miRNA
Genome position Chr9:150749670-150749755 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR2287163
Length 24
Mature sequence(if miRNA) 63 - UACUGAGAAUUUUAUUGAAGAUGA - 86
Stem-loop(if miRNA) --    AG            U    U ---A   -AA       U
  AUCU  AAUAGGAUUUUC GUAG G    UUU   GUUUUUU U
  ||||  |||||||||||| |||| |    |||   |||||||
  UAGA  UUAUUUUAAGAG CAUC C    GAG   UAAGAAG U
AG    AG            U    C GGGG   GAC       U
Stem-loop sequence AUCUAGAAUAGGAUUUUCUGUAGUGAUUUAAGUUUUUUUUUUGAAGAAUCAGGAGGGGGCCCUACUGAGAAUUUUAUUGAAGAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008647735.2
ncRNA:24   AGUAGAAGUUAUUUUAAGAGUCAU   1
  |**|=||=||*||||||||||||=
targets:1641   UGUUUUUUAAAAAAAUUCUCAGUG   1664

3.0 PREDICTED: Zea mays gibberellin 2-beta-dioxygenase 8 (LOC103627438), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647736.2
ncRNA:24   AGUAGAAGUUAUUUUAAGAGUCAU   1
  |**|=||=||*||||||||||||=
targets:1637   UGUUUUUUAAAAAAAUUCUCAGUG   1660

3.0 PREDICTED: Zea mays gibberellin 2-beta-dioxygenase 8 (LOC103627438), transcript variant X2, mRNA NA coding protein psRNATarget