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BaseInfo

ncRNA ID	novel_zma_miR3639
Species	Zea mays
Class	miRNA
Genome position	Chr1:217016119-217016192 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2287162;SRR5451003;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - CCCGAGAGGAUUGGAGGGGAUUGA - 24
Stem-loop(if miRNA)	--    A                            AA   CCCG GAGGAUUGGAGGGGAUUGAGGGGGAAAU  A   |||| ||||||||||||||||||||||||||||   GGGC CUCCUAGCCUCCCCUAACUCCCCCUUUA  C UA    C                            AU
Stem-loop sequence	CCCGAGAGGAUUGGAGGGGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCGAUCCUCCCGGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:24   AGUUAGGGGAGGUUAGGAGAGCCC   1   |=|||||||||||||||||||||| targets:83   UUAAUCCCCUCCAAUCCUCUCGGG   106 Target Full Sequence	0.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AGUUAGGGGAGGUUAGGAGAGCCC   1   |=||||||||=||||||||*|||| targets:73   UUAAUCCCCUUCAAUCCUCCCGGG   96 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   AGUUAGGGGAGGUUAGGAGAGCCC   1   |=||||||||=||||||||*|||| targets:73   UUAAUCCCCUUCAAUCCUCCCGGG   96 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AGUUAGGGGAGGUUAGGAGAGCCC   1   |=||||||||=||||||||*|||| targets:73   UUAAUCCCCUUCAAUCCUCCCGGG   96 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AGUUAGGGGAGGUUAGGAGAGCCC   1   |=||||||||=||||||||*|||| targets:827   UUAAUCCCCUUCAAUCCUCCCGGG   850 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AGUUAGGGGAGGUUAGGAGAGCCC   1   |=||||||||=||||||||*|||| targets:866   UUAAUCCCCUUCAAUCCUCCCGGG   889 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AGUUAGGGGAGGUUAGGAGAGCCC   1   |=||||||||=||||||||*|||| targets:871   UUAAUCCCCUUCAAUCCUCCCGGG   894 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AGUUAGGGGAGGUUAGGAGAGCCC   1   |=||||||||=||||||||*|||| targets:871   UUAAUCCCCUUCAAUCCUCCCGGG   894 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget