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BaseInfo

ncRNA ID novel_zma_miR3622
Species Zea mays
Class miRNA
Genome position Chr9:100082916-100082999 [-]
Reference genome RefGen_v4
Source SRR2287031
Length 22
Mature sequence(if miRNA) 1 - UUGAGCCGCGCCAAUAUCUCUU - 22
Stem-loop(if miRNA) --GC          A         C      A         A
    GAUAUUGGUG GGUUCAAUC GAUGUU GGUUUUACA A
    |||||||||| ||||||||| |||||| ||||||||| A
    CUAUAACCGC CCGAGUUAG CUAUGA CUAAAAUGU G
UUCU          G         U      -         C
Stem-loop sequence GCGAUAUUGGUGAGGUUCAAUCCGAUGUUAGGUUUUACAAAAGCUGUAAAAUCAGUAUCUGAUUGAGCCGCGCCAAUAUCUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KJ726875.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =|||||||||||||||||||||
targets:434   GAGAGAUAUUGGCGCGGCUCAA   455

0.0 Zea mays clone pUT3416 GRAS transcription factor (GRAS31) mRNA, partial cds NA coding protein psRNATarget
BT069447.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =|||||||||||||||||||||
targets:503   GAGAGAUAUUGGCGCGGCUCAA   524

0.0 Zea mays full-length cDNA clone ZM_BFb0134J07 mRNA, complete cds NA coding protein psRNATarget
KJ727939.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =|||||||||||||||||||||
targets:1103   GAGAGAUAUUGGCGCGGCUCAA   1124

0.0 Zea mays clone pUT6034 GRAS transcription factor (GRAS80) mRNA, partial cds NA coding protein psRNATarget
BT063504.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =|||||||||||||||||||||
targets:1196   GAGAGAUAUUGGCGCGGCUCAA   1217

0.0 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds NA coding protein psRNATarget
BT053927.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =|||||||||||||||||||||
targets:916   GAGAGAUAUUGGCGCGGCUCAA   937

0.0 Zea mays full-length cDNA clone ZM_BFc0046K18 mRNA, complete cds NA coding protein psRNATarget
BT063450.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =|||||||||||||||||||||
targets:1369   GAGAGAUAUUGGCGCGGCUCAA   1390

0.0 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds NA coding protein psRNATarget
NM_001174946.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =|||||||||||||||||||||
targets:1369   GAGAGAUAUUGGCGCGGCUCAA   1390

0.0 Zea mays Scarecrow-like protein 6 (LOC100382187), mRNA NA coding protein psRNATarget
XM_020552649.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =|||||||||||||||||||||
targets:1377   GAGAGAUAUUGGCGCGGCUCAA   1398

0.0 PREDICTED: Zea mays uncharacterized LOC100279263 (LOC100279263), mRNA NA coding protein psRNATarget
EU948879.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:600   GCGAGAUAUUGGCGCGGCUCAA   621

0.0 Zea mays clone 388565 mRNA sequence NA coding protein psRNATarget
XM_020541749.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:356   GCGAGAUAUUGGCGCGGCUCAA   377

0.0 PREDICTED: Zea mays scarecrow-like protein 6 (LOC103634376), mRNA NA coding protein psRNATarget
JX428447.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:494   GCGAGAUAUUGGCGCGGCUCAA   515

0.0 Zea mays subsp. mays clone pUT3041 GRAS32 GRAS type transcription factor mRNA, partial cds NA coding protein psRNATarget
EU974370.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:494   GCGAGAUAUUGGCGCGGCUCAA   515

0.0 Zea mays clone 447391 scarecrow-like 6 mRNA, complete cds NA coding protein psRNATarget
NM_001147253.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:550   GCGAGAUAUUGGCGCGGCUCAA   571

0.0 Zea mays scarecrow-like 6 (LOC100272800), mRNA NA coding protein psRNATarget
BT039466.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:550   GCGAGAUAUUGGCGCGGCUCAA   571

0.0 Zea mays full-length cDNA clone ZM_BFc0014N06 mRNA, complete cds NA coding protein psRNATarget
KJ727757.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:902   GCGAGAUAUUGGCGCGGCUCAA   923

0.0 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds NA coding protein psRNATarget
KJ726956.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:1133   GCGAGAUAUUGGCGCGGCUCAA   1154

0.0 Zea mays clone pUT3653 GRAS transcription factor (GRAS79) mRNA, partial cds NA coding protein psRNATarget
BT018771.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:804   GCGAGAUAUUGGCGCGGCUCAA   825

0.0 Zea mays clone EL01N0525E08.d mRNA sequence NA coding protein psRNATarget
NM_001148573.2
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:1161   GCGAGAUAUUGGCGCGGCUCAA   1182

0.0 Zea mays Scarecrow-like protein 6 (LOC100274201), mRNA NA coding protein psRNATarget
BT062028.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:1275   GCGAGAUAUUGGCGCGGCUCAA   1296

0.0 Zea mays full-length cDNA clone ZM_BFb0207H13 mRNA, complete cds NA coding protein psRNATarget
NM_001174511.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||||||||||||||||
targets:1275   GCGAGAUAUUGGCGCGGCUCAA   1296

0.0 Zea mays GRAS transcription factor (GRAS79), mRNA NA coding protein psRNATarget
KJ726955.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =||*||||||||||||||||||
targets:767   GAGCGAUAUUGGCGCGGCUCAA   788

1.0 Zea mays clone pUT3652 GRAS transcription factor (GRAS10) mRNA, partial cds NA coding protein psRNATarget
BT054213.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =||*||||||||||||||||||
targets:1074   GAGCGAUAUUGGCGCGGCUCAA   1095

1.0 Zea mays full-length cDNA clone ZM_BFb0171M14 mRNA, complete cds NA coding protein psRNATarget
XM_020538634.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =||*||||||||||||||||||
targets:1138   GAGCGAUAUUGGCGCGGCUCAA   1159

1.0 PREDICTED: Zea mays uncharacterized LOC100279420 (LOC100279420), mRNA NA coding protein psRNATarget
HI407070.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  *=|||=||||||||||*|||||
targets:10   CGGAGGUAUUGGCGCGCCUCAA   31

2.5 Sequence 5195 from Patent EP2074227 NA coding protein psRNATarget
JB167531.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  *=|||=||||||||||*|||||
targets:10   CGGAGGUAUUGGCGCGCCUCAA   31

2.5 Sequence 5195 from Patent EP2559767 NA coding protein psRNATarget
LQ239200.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  *=|||=||||||||||*|||||
targets:10   CGGAGGUAUUGGCGCGCCUCAA   31

2.5 Sequence 5195 from Patent EP2985353 NA coding protein psRNATarget
EU964974.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||*|||||||||||||
targets:812   GCGAGAUACUGGCGCGGCUCAA   833

1.0 Zea mays clone 282885 mRNA sequence NA coding protein psRNATarget
XM_008651591.2
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  =*||||||*|||||||||||||
targets:1014   GCGAGAUACUGGCGCGGCUCAA   1035

1.0 PREDICTED: Zea mays scarecrow-like protein 6 (LOC103630535), mRNA NA coding protein psRNATarget
EU950482.1
ncRNA:22   UUCUCUAUAACCGCGCCGAGUU   1
  *=|||=||||||||||*|||||
targets:157   CGGAGGUAUUGGCGCGCCUCAA   178

2.5 Zea mays clone 494016 mRNA sequence NA coding protein psRNATarget
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