ncRNA ID | novel_zma_miR3621 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr9:102502617-102502742 [-] |
Reference genome | RefGen_v4 |
Source | SRR2287031 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUCCUGAACAAACGAACGCAGCCU - 24 |
Stem-loop(if miRNA) |
---G               C   A   U AC UA    CAAUCCAA     -----  UA     - UA     UGUGUUCGUUUGUUC GGA UUG G  C  GAAU        CCAGG     AA  CUUAU C  A     ||||||||||||||| ||| ||| |  |  ||||        |||||     ||  ||||| |     ACGCAAGCAAACAAG CCU AAC C  G  CUUG        GGUCC     UU  GGAUA G  U UCCG               U   -   C CC UC    ----CCAA     ACUAG  UC     U UU |
Stem-loop sequence | GUGUGUUCGUUUGUUCCGGAAUUGUGACCUAGAAUCAAUCCAACCAGGAAUACUUAUCUAAUUUGUAUAGGCUUUGAUCACCUGGAACCGUUCCUGCCCCCAAUCCUGAACAAACGAACGCAGCCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AY109256.1 |
|
1.5 | Zea mays PCO124672 mRNA sequence | NA | coding protein | psRNATarget | |||||||||
XM_008651541.2 |
|
1.5 | PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase IRK (LOC103630489), mRNA | NA | coding protein | psRNATarget |