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BaseInfo

ncRNA ID novel_zma_miR3621
Species Zea mays
Class miRNA
Genome position Chr9:102502617-102502742 [-]
Reference genome RefGen_v4
Source SRR2287031
Length 24
Mature sequence(if miRNA) 1 - AUCCUGAACAAACGAACGCAGCCU - 24
Stem-loop(if miRNA) ---G               C   A   U AC UA    CAAUCCAA     -----  UA     - UA
    UGUGUUCGUUUGUUC GGA UUG G  C  GAAU        CCAGG     AA  CUUAU C  A
    ||||||||||||||| ||| ||| |  |  ||||        |||||     ||  ||||| |
    ACGCAAGCAAACAAG CCU AAC C  G  CUUG        GGUCC     UU  GGAUA G  U
UCCG               U   -   C CC UC    ----CCAA     ACUAG  UC     U UU
Stem-loop sequence GUGUGUUCGUUUGUUCCGGAAUUGUGACCUAGAAUCAAUCCAACCAGGAAUACUUAUCUAAUUUGUAUAGGCUUUGAUCACCUGGAACCGUUCCUGCCCCCAAUCCUGAACAAACGAACGCAGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY109256.1
ncRNA:24   UCCGACGCAAGCAAACAAGUCCUA   1
  |||*|||||||*||||||||||||
targets:301   AGGGUGCGUUCUUUUGUUCAGGAU   324

1.5 Zea mays PCO124672 mRNA sequence NA coding protein psRNATarget
XM_008651541.2
ncRNA:24   UCCGACGCAAGCAAACAAGUCCUA   1
  |||*|||||||*||||||||||||
targets:2928   AGGGUGCGUUCUUUUGUUCAGGAU   2951

1.5 PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase IRK (LOC103630489), mRNA NA coding protein psRNATarget