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BaseInfo

ncRNA ID	novel_zma_miR3619
Species	Zea mays
Class	miRNA
Genome position	Chr9:113569473-113569620 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159
Length	24
Mature sequence(if miRNA)	125 - AACACCGGACUGUCCAGUGUGCAC - 148
Stem-loop(if miRNA)	--AA       CU  C                -     --   -AA   UC - CAACAACUUUCCCAACGGUCAAU     CACCGGA  GU CAGUGUGCACCGGACA GUCUG  GCC   UGG  G A                       A     |||||||  || |||||||||||||||| |||||  |||   |||  | |                       G     GUGGCCU  CA GUCACGCGUGGUCUGU CAGAC  CGG   CGG  U C                       U CUUC       AU  A                A     UA   AGA   -- G AGUCGGCUGGCAACUUCCCUCGG
Stem-loop sequence	AACACCGGACUGUCCAGUGUGCACCGGACAGUCUGGCCAAUGGUCGACAACAACUUUCCCAACGGUCAAUAGUGGCUCCCUUCAACGGUCGGCUGACGUGGCAGAGGCAUCAGACAUGUCUGGUGCGCACUGAACUAUCCGGUGCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT086229.2	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   |||||||||||||||||||||||* targets:535   GUGCACACUGGACAGUCCGGUGUG   558 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   ||||||||||||||||||||||** targets:2657   GUGCACACUGGACAGUCCGGUGCC   2680 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   ||||||||*||||||||||||||* targets:624   GUGCACACCGGACAGUCCGGUGUA   647 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   ||||||||*||||||||||||||* targets:624   GUGCACACCGGACAGUCCGGUGUA   647 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT018386.1	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   |||||||||||||*|||||||||* targets:773   GUGCACACUGGACUGUCCGGUGUG   796 Target Full Sequence	2.5	Zea mays clone EL01N0313G04.d mRNA sequence	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   ||||||||*|||||||||||||*| targets:744   GUGCACACCGGACAGUCCGGUGCU   767 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CA--CGUGUGACCUGUCAGGCCACAA   1   ||--||||||||||||||||||||** targets:264   GUUGGCACACUGGACAGUCCGGUGCA   289 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   ||||||||*|||||||||||||*| targets:285   GUGCACACCGGACAGUCCGGUGCU   308 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   ||||||||*|||||||||||||*| targets:1401   GUGCACACCGGACAGUCCGGUGCU   1424 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
JB169550.1	ncRNA:24   CAC-GUGUGACCUGUCAGGCCACAA   1   |||-|=|||||||||||||||||** targets:67   GUGGCGCACUGGACAGUCCGGUGCG   91 Target Full Sequence	2.5	Sequence 7214 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241219.1	ncRNA:24   CAC-GUGUGACCUGUCAGGCCACAA   1   |||-|=|||||||||||||||||** targets:67   GUGGCGCACUGGACAGUCCGGUGCG   91 Target Full Sequence	2.5	Sequence 7214 from Patent EP2985353	NA	coding protein	psRNATarget
HI409089.1	ncRNA:24   CAC-GUGUGACCUGUCAGGCCACAA   1   |||-|=|||||||||||||||||** targets:67   GUGGCGCACUGGACAGUCCGGUGCG   91 Target Full Sequence	2.5	Sequence 7214 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   **||=|||*||||||||||||||* targets:781   UGGCGCACCGGACAGUCCGGUGUG   804 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CACGUGUGACCUGUCAGGCCACAA   1   **||=|||*||||||||||||||* targets:781   UGGCGCACCGGACAGUCCGGUGUG   804 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget