Search result

BaseInfo

ncRNA ID	novel_zma_miR3615
Species	Zea mays
Class	miRNA
Genome position	Chr9:120303711-120303891 [-]
Reference genome	RefGen_v4
Source	SRR2287031
Length	24
Mature sequence(if miRNA)	1 - AAGGAACCGCCAGUAGAAAUAGCA - 24
Stem-loop(if miRNA)	--UG       G                                                                     U  C          AUUUCUA UGGCGGUUUCUUAAGAAAACCGCCACUAGAAAUCGUAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCA UA AAAUCA     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||U     UAAAGAU ACCGCCAAGGAAUUCUUUUGGCGGUGAUUUUUAGCAUAAAGAUGACCGCCAAGGAAUUCUUUUGGCGGU AU UUUAGG ACGA       G                                                                     C  C
Stem-loop sequence	UGAUUUCUAGUGGCGGUUUCUUAAGAAAACCGCCACUAGAAAUCGUAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCAUUACAAAUCAUGGAUUUCUACUGGCGGUUUUCUUAAGGAACCGCCAGUAGAAAUACGAUUUUUAGUGGCGGUUUUCUUAAGGAACCGCCAGUAGAAAUAGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235114.1	ncRNA:24   ACGAUAAAGAUGACCGCCAAGGAA   1   |**|||||||||*||||||||||| targets:32   UCAUAUUUCUACAGGCGGUUCCUU   55 Target Full Sequence	1.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   ACGAUAAAGAUGACCGCCAAGGAA   1   |**|||||||||*||||||||||| targets:32   UCAUAUUUCUACAGGCGGUUCCUU   55 Target Full Sequence	1.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   ACGAUAAAGAUGACCGCCAAGGAA   1   |**|||||||||*||||||||||| targets:32   UCAUAUUUCUACAGGCGGUUCCUU   55 Target Full Sequence	1.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235227.1	ncRNA:24   ACGAUAAAGAUGACCGCCAAGGAA   1   ||--|||||||*|||||||||||| targets:8   UG--AUUUCUAGUGGCGGUUCCUU   29 Target Full Sequence	1.5	Sequence 1222 from Patent EP2985353	NA	coding protein	psRNATarget
HI403097.1	ncRNA:24   ACGAUAAAGAUGACCGCCAAGGAA   1   ||--|||||||*|||||||||||| targets:8   UG--AUUUCUAGUGGCGGUUCCUU   29 Target Full Sequence	1.5	Sequence 1222 from Patent EP2074227	NA	coding protein	psRNATarget
JB163558.1	ncRNA:24   ACGAUAAAGAUGACCGCCAAGGAA   1   ||--|||||||*|||||||||||| targets:8   UG--AUUUCUAGUGGCGGUUCCUU   29 Target Full Sequence	1.5	Sequence 1222 from Patent EP2559767	NA	coding protein	psRNATarget
EU944427.1	ncRNA:24   ACGAUAAAGAUGACCGCCAAGGAA   1   **|**|||||||||||||||=||| targets:500   AUCAUUUUCUACUGGCGGUUUCUU   523 Target Full Sequence	1.5	Zea mays clone 218366 mRNA sequence	NA	coding protein	psRNATarget
BT069194.2	ncRNA:24   ACGAUAAAGAUGACCGCCAAGGAA   1   |||**|||=*|||||||||||||| targets:913   UGCACUUUUCACUGGCGGUUCCUU   936 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176701.1	ncRNA:24   ACGAUAAAGAUGACCGCCAAGGAA   1   |||**|||=*|||||||||||||| targets:913   UGCACUUUUCACUGGCGGUUCCUU   936 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA	NA	coding protein	psRNATarget