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BaseInfo

ncRNA ID	novel_zma_miR3608
Species	Zea mays
Class	miRNA
Genome position	Chr8:10343773-10343901 [+]
Reference genome	RefGen_v4
Source	SRR2287031
Length	24
Mature sequence(if miRNA)	1 - UCUGCACAGGCGCGGACGGUCCGU - 24
Stem-loop(if miRNA)	--    CA  G        G     U G  A     -     G     -UGGCCU    C     U   UCUG  CA GCGCGGAC GUCCG G CC GGGGC CGGAC GUCCG       GGCG GAGGC A   ||||  || |||||||| ||||| | || ||||| ||||| |||||       |||| |||||   GGAC  GU CGCGCCUG CAGGC C GG UCCCG GCCUG UAGGC       CCGU CUUUG G GG    AC  G        G     - G  A     C     G     UAGUAGU    C     G
Stem-loop sequence	UCUGCACAGGCGCGGACGGUCCGUGGCCAGGGGCCGGACGGUCCGUGGCCUGGCGCGAGGCUAGGGUUUCCUGCCUGAUGAUCGGAUGGUCCGCGCCCUAGGGCCGGACGGUCCGCGCGUGCACAGGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235209.1	ncRNA:24   UGCCUGGCAGGCGCGGACACGUCU   1   =||||||||||||||||||||||| targets:44   GCGGACCGUCCGCGCCUGUGCAGA   67 Target Full Sequence	0.0	Sequence 1204 from Patent EP2985353	NA	coding protein	psRNATarget
HI403079.1	ncRNA:24   UGCCUGGCAGGCGCGGACACGUCU   1   =||||||||||||||||||||||| targets:44   GCGGACCGUCCGCGCCUGUGCAGA   67 Target Full Sequence	0.0	Sequence 1204 from Patent EP2074227	NA	coding protein	psRNATarget
JB163540.1	ncRNA:24   UGCCUGGCAGGCGCGGACACGUCU   1   =||||||||||||||||||||||| targets:44   GCGGACCGUCCGCGCCUGUGCAGA   67 Target Full Sequence	0.0	Sequence 1204 from Patent EP2559767	NA	coding protein	psRNATarget
EZ067064.1	ncRNA:24   UGCCUGGCAGGCGCGGACACGUCU   1   =||||||||||||*|||||||||| targets:32   GCGGACCGUCCGCCCCUGUGCAGA   55 Target Full Sequence	1.5	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   UGCCUGGCAGGCGCGGACACGUCU   1   =||||||||||||*|||||||||| targets:1344   GCGGACCGUCCGCCCCUGUGCAGA   1367 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   UGCCUGGCAGGCGCGGACACGUCU   1   =||||||||||||*|||||||||| targets:1344   GCGGACCGUCCGCCCCUGUGCAGA   1367 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149438.1	ncRNA:24   UGCCUGGCAGGCGCGGACACGUCU   1   *|||||*|||||||||||*||||| targets:1942   CCGGACGGUCCGCGCCUGCGCAGA   1965 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA	NA	coding protein	psRNATarget
EU955374.1	ncRNA:24   UGCCUGGCAGGCGCGGACACGUCU   1   *|||||*|||||||||||*||||| targets:1942   CCGGACGGUCCGCGCCUGCGCAGA   1965 Target Full Sequence	2.5	Zea mays clone 1529849 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget