ncRNA ID | novel_zma_miR3607 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr9:79557310-79557444 [-] |
Reference genome | RefGen_v4 |
Source | SRR1583944;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647389;SRR2647390;SRR2647467 |
Length | 24 |
Mature sequence(if miRNA) | 1 - ACCGUCCGUCCCUGUGCAGAGGGC - 24 |
Stem-loop(if miRNA) |
---UC      C   UC      C     -  C -U U   GC    C       -    ACCA   A   C      CUGCAC AGG  GCGGAC GUCCG GC C  G GCC  GGAC GUCCGCG CCUG    GAG GCG C      |||||| |||  |||||| ||||| || |  | |||  |||| ||||||| ||||    ||| |||      GACGUG UCC  UGCCUG CAGGC CG G  C CGG  CCUG CAGGCGC GGAC    CUC CGC G CGGGA      -   -C      C     G  C UC C   --    C       C    CACG   -   U |
Stem-loop sequence | UCCUGCACCAGGUCGCGGACCGUCCGGCCCUGUGCCGCGGACCGUCCGCGCCUGACCAGAGAGCGCCGUCGCCUCGCACCAGGCCGCGGACCGUCCGGCCCCUGCGCGCGGACCGUCCGUCCCUGUGCAGAGGGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EU970066.1 |
|
1.5 | Zea mays clone 339328 mRNA sequence | NA | coding protein | psRNATarget | |||||||||
EU968855.1 |
|
2.5 | Zea mays clone 324570 mRNA sequence | NA | coding protein | psRNATarget |