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BaseInfo

ncRNA ID	novel_zma_miR3605
Species	Zea mays
Class	miRNA
Genome position	Chr8:93812234-93812314 [+]
Reference genome	RefGen_v4
Source	SRR2287031
Length	24
Mature sequence(if miRNA)	1 - CCAUAUGGAUUGAGUGGGAUUGGG - 24
Stem-loop(if miRNA)	--  A         AGU         U    UUAAAUCCUA   CC UAUGGAUUG   GGGAUUGGG GGAU          A   || |||||||||   ||||||||| ||||          G   GG AUACCUAAC   UUUUAAUUC UUCU          C AU  -         CUU         -    UCAAACUGAA
Stem-loop sequence	CCAUAUGGAUUGAGUGGGAUUGGGUGGAUUUAAAUCCUAAGCAAGUCAAACUUCUUCUUAAUUUUUUCCAAUCCAUAGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ064093.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ||||||||||||||||||||=||| targets:190   CCCAAUCCCACUCAAUCCAUGUGG   213 Target Full Sequence	1.5	TSA: Zea mays contig65216, mRNA sequence	NA	coding protein	psRNATarget
LQ241137.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ||||||||||||||||||||=||| targets:75   CCCAAUCCCACUCAAUCCAUGUGG   98 Target Full Sequence	1.5	Sequence 7132 from Patent EP2985353	NA	coding protein	psRNATarget
HI409007.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ||||||||||||||||||||=||| targets:75   CCCAAUCCCACUCAAUCCAUGUGG   98 Target Full Sequence	1.5	Sequence 7132 from Patent EP2074227	NA	coding protein	psRNATarget
JB169468.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ||||||||||||||||||||=||| targets:75   CCCAAUCCCACUCAAUCCAUGUGG   98 Target Full Sequence	1.5	Sequence 7132 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542014.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ||||||=|||||||=||||||||| targets:182   CCCAAUUCCACUCAGUCCAUAUGG   205 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|=||||||||||||||||||||| targets:2084   UCUAAUCCCACUCAAUCCAUAUGG   2107 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042044.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|=||||||||||||||||||||| targets:1367   UCUAAUCCCACUCAAUCCAUAUGG   1390 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
BT069961.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|||||||||||||||=||||||| targets:112   UCCAAUCCCACUCAAUUCAUAUGG   135 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:5806   UCCAAUCCCACUCAAUCCACAUGG   5829 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1231   UCCAAUCCCACUCAAUCCACAUGG   1254 Target Full Sequence	1.5	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008675817.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||||||||||||||*|||| targets:4059   CUCAAUCCCACUCAAUCCACAUGG   4082 Target Full Sequence	1.5	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1083   UCCAAUCCCACUCAAUCCACAUGG   1106 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:2502   UCCAAUCCCACUCAAUCCACAUGG   2525 Target Full Sequence	1.5	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||||*|||||||||||||| targets:1968   CUCAAUCCCCCUCAAUCCAUAUGG   1991 Target Full Sequence	1.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:2213   UCCAAUCCCACUCAAUCCACAUGG   2236 Target Full Sequence	1.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||||*|||||||||||||| targets:605   CUCAAUCCCCCUCAAUCCAUAUGG   628 Target Full Sequence	1.0	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840 Target Full Sequence	1.5	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840 Target Full Sequence	1.5	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555 Target Full Sequence	1.5	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
BT043378.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|||||||||||||||||||||*| targets:1468   UCCAAUCCCACUCAAUCCAUAUAG   1491 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|||||||||||||||||||||*| targets:1468   UCCAAUCCCACUCAAUCCAUAUAG   1491 Target Full Sequence	1.5	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||||*|||||||||||||| targets:1072   CUCAAUCCCUCUCAAUCCAUAUGG   1095 Target Full Sequence	1.0	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:530   UCCAAUCCCACUCAAUCCACAUGG   553 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:178   UCCAAUCCCACUCAAUCCACAUGG   201 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:876   UCCAAUCCCACUCAAUCCACAUGG   899 Target Full Sequence	1.5	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:747   UCCAAUCCCACUCAAUCCACAUGG   770 Target Full Sequence	1.5	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
HI403005.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|||||||||||||||||||||*| targets:100   UCCAAUCCCACUCAAUCCAUAUAG   123 Target Full Sequence	1.5	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:100   UCCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|||||||||||||||||||||*| targets:100   UCCAAUCCCACUCAAUCCAUAUAG   123 Target Full Sequence	1.5	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
JB163466.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|||||||||||||||||||||*| targets:100   UCCAAUCCCACUCAAUCCAUAUAG   123 Target Full Sequence	1.5	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:91   UCCAAUCCCACUCAAUCCACAUGG   114 Target Full Sequence	1.5	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:91   UCCAAUCCCACUCAAUCCACAUGG   114 Target Full Sequence	1.5	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:91   UCCAAUCCCACUCAAUCCACAUGG   114 Target Full Sequence	1.5	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:82   UCCAAUCCCACUCAAUCCACAUGG   105 Target Full Sequence	1.5	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
HI405902.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:82   UCCAAUCCCACUCAAUCCACAUGG   105 Target Full Sequence	1.5	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
JB166363.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:82   UCCAAUCCCACUCAAUCCACAUGG   105 Target Full Sequence	1.5	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
JB166350.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:81   UCCAAUCCCACUCAAUCCACAUGG   104 Target Full Sequence	1.5	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:81   UCCAAUCCCACUCAAUCCACAUGG   104 Target Full Sequence	1.5	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
HI405889.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||| targets:81   UCCAAUCCCACUCAAUCCACAUGG   104 Target Full Sequence	1.5	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||||*|||||||||||||| targets:79   CUCAAUCCCCCUCAAUCCAUAUGG   102 Target Full Sequence	1.0	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||||*|||||||||||||| targets:79   CUCAAUCCCCCUCAAUCCAUAUGG   102 Target Full Sequence	1.0	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||||*|||||||||||||| targets:79   CUCAAUCCCCCUCAAUCCAUAUGG   102 Target Full Sequence	1.0	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
EZ052459.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||=||||=||||||||||||||* targets:26   UCCGAUCCUACUCAAUCCAUAUGA   49 Target Full Sequence	2.0	TSA: Zea mays contig53580, mRNA sequence	NA	coding protein	psRNATarget
XM_020539703.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:62   UCCAAUCCCGCUCAAUCCACAUGG   85 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:2906   UCCAAUCCCGCUCAAUCCACAUGG   2929 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:2802   UCCAAUCCCGCUCAAUCCACAUGG   2825 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:2350   UCCAAUCUCACUCAAUCCACAUGG   2373 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:2290   UCCAAUCUCACUCAAUCCACAUGG   2313 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:2283   UCCAAUCUCACUCAAUCCACAUGG   2306 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:2155   UCCAAUCUCACUCAAUCCACAUGG   2178 Target Full Sequence	2.5	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:2154   UCCAAUCUCACUCAAUCCACAUGG   2177 Target Full Sequence	2.5	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:2082   UCCAAUCUCACUCAAUCCACAUGG   2105 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:2142   UCCAAUCCCGCUCAAUCCACAUGG   2165 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:2031   UCCAAUCCCGCUCAAUCCACAUGG   2054 Target Full Sequence	2.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:2049   UCCAAUCCCGCUCAAUCCACAUGG   2072 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:1954   UCCAAUCCCGCUCAAUCCACAUGG   1977 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:1888   UCCAAUCCCGCUCAAUCCACAUGG   1911 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:1621   UCCAAUCCCGCUCAAUCCACAUGG   1644 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ==|||||||||||||||||*|||| targets:1417   UUCAAUCCCACUCAAUCCACAUGG   1440 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||=|||||||||||*|||| targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
BT061560.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||=|||||||||||*|||| targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:1130   UCCAAUCCCGCUCAAUCCACAUGG   1153 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||=|||||||||*|||| targets:1130   UCCAAUCCCGCUCAAUCCACAUGG   1153 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ==|||||||*|||||||||||||| targets:848   UUCAAUCCCCCUCAAUCCAUAUGG   871 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ==|||||||||||||||||*|||| targets:1126   UUCAAUCCCACUCAAUCCACAUGG   1149 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ==|||||||||||||||||*|||| targets:1126   UUCAAUCCCACUCAAUCCACAUGG   1149 Target Full Sequence	1.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:248   UCCAAUCUCACUCAAUCCACAUGG   271 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:457   UCCAAUCUCACUCAAUCCACAUGG   480 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
EU972313.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|=|||||*|||||||||||||| targets:29   CUCGAUCCCCCUCAAUCCAUAUGG   52 Target Full Sequence	1.0	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ==|||||||||||||||||*|||| targets:93   UUCAAUCCCACUCAAUCCACAUGG   116 Target Full Sequence	1.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ==|||||||||||||||||*|||| targets:100   UUCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ==|||||||||||||||||*|||| targets:100   UUCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ==|||||||||||||||||*|||| targets:100   UUCAAUCCCACUCAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:93   UCCAAUCUCACUCAAUCCACAUGG   116 Target Full Sequence	2.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:93   UCCAAUCUCACUCAAUCCACAUGG   116 Target Full Sequence	2.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:93   UCCAAUCUCACUCAAUCCACAUGG   116 Target Full Sequence	2.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:89   UCCAAUCUCACUCAAUCCACAUGG   112 Target Full Sequence	2.5	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:89   UCCAAUCUCACUCAAUCCACAUGG   112 Target Full Sequence	2.5	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:89   UCCAAUCUCACUCAAUCCACAUGG   112 Target Full Sequence	2.5	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=||||||=*|||||||||||||| targets:80   CUCAAUCCUCCUCAAUCCAUAUGG   103 Target Full Sequence	2.0	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=||||||=*|||||||||||||| targets:80   CUCAAUCCUCCUCAAUCCAUAUGG   103 Target Full Sequence	2.0	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=||||||=*|||||||||||||| targets:80   CUCAAUCCUCCUCAAUCCAUAUGG   103 Target Full Sequence	2.0	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:81   UCCAAUCUCACUCAAUCCACAUGG   104 Target Full Sequence	2.5	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:81   UCCAAUCUCACUCAAUCCACAUGG   104 Target Full Sequence	2.5	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:81   UCCAAUCUCACUCAAUCCACAUGG   104 Target Full Sequence	2.5	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||=|||||||||||*|||| targets:18   UCCAAUCUCACUCAAUCCACAUGG   41 Target Full Sequence	2.5	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   ||=||||||*|||||||||||||* targets:463   CCUAAUCCCUCUCAAUCCAUAUGA   486 Target Full Sequence	2.0	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||||||||||||*|||* targets:122   UCCAAUCCCACUCAAUCCACAUGA   145 Target Full Sequence	2.5	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|=||||=|||||||||||*|||| targets:3440   UCUAAUCUCACUCAAUCCACAUGG   3463 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|=||||=|||||||||||*|||| targets:3409   UCUAAUCUCACUCAAUCCACAUGG   3432 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|=||||=|||||||||||*|||| targets:3396   UCUAAUCUCACUCAAUCCACAUGG   3419 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT034589.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =|=||*||=||||||||||||||| targets:793   UCUAAACCUACUCAAUCCAUAUGG   816 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0002A19 mRNA, complete cds	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   *=|||||||*=||||||||||||| targets:975   AUCAAUCCCCUUCAAUCCAUAUGG   998 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   *=|||||||*=||||||||||||| targets:1496   AUCAAUCCCCUUCAAUCCAUAUGG   1519 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   *=|||||||*=||||||||||||| targets:1496   AUCAAUCCCCUUCAAUCCAUAUGG   1519 Target Full Sequence	2.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   *=|||||||*=||||||||||||| targets:1482   AUCAAUCCCCUUCAAUCCAUAUGG   1505 Target Full Sequence	2.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   *=|||||||*=||||||||||||| targets:1464   AUCAAUCCCCUUCAAUCCAUAUGG   1487 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   *=|||||||*=||||||||||||| targets:1420   AUCAAUCCCCUUCAAUCCAUAUGG   1443 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||*||||||||*||||| targets:3926   UCCAAUCCCCCUCAAUCCCUAUGG   3949 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||*|*|||||||||||||| targets:1607   CUCAAUCACCCUCAAUCCAUAUGG   1630 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   |=|||||*|*|||||||||||||| targets:1607   CUCAAUCACCCUCAAUCCAUAUGG   1630 Target Full Sequence	2.0	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   =||||||||*||||||||*||||| targets:38   UCCAAUCCCCCUCAAUCCCUAUGG   61 Target Full Sequence	2.5	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   *=|||||=|*=||||||||||||| targets:3119   AUCAAUCUCCUUCAAUCCAUAUGG   3142 Target Full Sequence	3.0	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   GGGUUAGGGUGAGUUAGGUAUACC   1   *=|=|||||*=||||||||||||| targets:1697   AUCGAUCCCCUUCAAUCCAUAUGG   1720 Target Full Sequence	2.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   GGG--UUAGGGUGAGUUAGGUAUACC   1   |==--||||||*|||||||||||||| targets:1206   CUUUGAAUCCCCCUCAAUCCAUAUGG   1231 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   GGG--UUAGGGUGAGUUAGGUAUACC   1   |==--||||||*|||||||||||||| targets:934   CUUUGAAUCCCCCUCAAUCCAUAUGG   959 Target Full Sequence	1.0	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget