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BaseInfo

ncRNA ID novel_zma_miR3604
Species Zea mays
Class miRNA
Genome position Chr8:3296058-3296147 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR2287159;SRR2287161;SRR2287162
Length 21
Mature sequence(if miRNA) 1 - AAAUAUCAUUUUAGGACUACA - 21
Stem-loop(if miRNA) --      C     A      C                    G A
  AAAUAU AUUUU GGACUA AAAUAGGUUGAAAUAAGCUA U U
  |||||| ||||| |||||| |||||||||||||||||||| |
  UUUAUA UAAAA CCUGGU UUUAUUCGACUUUAUUCGAU A U
AU      A     C      A                    G G
Stem-loop sequence AAAUAUCAUUUUAGGACUACAAAUAGGUUGAAAUAAGCUAGUAUUGAGUAGCUUAUUUCAGCUUAUUUAUGGUCCCAAAAUAAUAUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001139196.1
ncRNA:21   ACAUCAGGAUUUUACUAUAAA   1
  |*||||=|||||=||||||||
targets:1041   UAUAGUUCUAAAGUGAUAUUU   1061

2.5 Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA NA coding protein psRNATarget
BT036602.1
ncRNA:21   ACAUCAGGAUUUUACUAUAAA   1
  |*||||=|||||=||||||||
targets:1041   UAUAGUUCUAAAGUGAUAUUU   1061

2.5 Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds NA coding protein psRNATarget