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BaseInfo

ncRNA ID novel_zma_miR3600
Species Zea mays
Class miRNA
Genome position Chr1:179648504-179648595 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR2287162
Length 24
Mature sequence(if miRNA) 69 - AAACUGGAGAAACCUAACAAGCGG - 92
Stem-loop(if miRNA) -- G    AG     -    GA      ----UUUGUUA   G    UC
  G UUGU  AGGUU CUUU  UUUGGU           GUC CCCU  C
  | ||||  ||||| ||||  ||||||           ||| ||||
  C AACA  UCCAA GAGG  AAACUA           UAG GGGG  U
GG G    -A     A    UC      UUUGUGUUAUG   A    UC
Stem-loop sequence GGUUGUAGAGGUUCUUUGAUUUGGUUUUGUUAGUCGCCCUUCCUCUGGGGAGAUGUAUUGUGUUUAUCAAACUGGAGAAACCUAACAAGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542196.1
ncRNA:24   GGCGAACAAUCCAAAGAGGUCAAA   1
  ||||***|||||||||||||||||
targets:1617   CCGCCCAUUAGGUUUCUCCAGUUU   1640

2.0 PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X6, mRNA NA coding protein psRNATarget