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BaseInfo

ncRNA ID novel_zma_miR3595
Species Zea mays
Class miRNA
Genome position Chr8:92686313-92686413 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR2287159;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR4237220;SRR5451003;SRR5451004;SRR5451005;SRR5451006
Length 21
Mature sequence(if miRNA) 81 - UUGAAGGGGAUUGGAGAGGAU - 101
Stem-loop(if miRNA) UUGAA                                 ----     G AU
     GGGGAUUGGAGAGGAUUAAAUCCCCUCUUAUAC    AAAUU U  A
     |||||||||||||||||||||||||||||||||    ||||| |  G
     CCCCUAACCUCUCCUAAUUUAGGGGAGGAUAUG    UUUAG G  G
CUAAC                                 CUAA     G GA
Stem-loop sequence UUGAAGGGGAUUGGAGAGGAUUAAAUCCCCUCUUAUACAAAUUGUAUAGGAGGGGAUUUAAUCGUAUAGGAGGGGAUUUAAUCCUCUCCAAUCCCCCAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ069159.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  *||||||||||||||||||||
targets:57   UUCCUCUCCAAUCCCCUUCAA   77

0.0 TSA: Zea mays contig04794, mRNA sequence NA coding protein psRNATarget
BT069589.2
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||||*||||||||||||||
targets:1022   AUCCUCACCAAUCCCCUUCAA   1042

1.0 Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds NA coding protein psRNATarget
LQ235143.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*||||||||=|||||||
targets:42   AUCCCCUCCAAUCUCCUUCAA   62

2.5 Sequence 1138 from Patent EP2985353 NA coding protein psRNATarget
HI403013.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*||||||||=|||||||
targets:42   AUCCCCUCCAAUCUCCUUCAA   62

2.5 Sequence 1138 from Patent EP2074227 NA coding protein psRNATarget
JB163474.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*||||||||=|||||||
targets:42   AUCCCCUCCAAUCUCCUUCAA   62

2.5 Sequence 1138 from Patent EP2559767 NA coding protein psRNATarget
XM_008674377.2
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*||||||||=|||||||
targets:3083   AUCCGCUCCAAUCUCCUUCAA   3103

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*||||||||=|||||||
targets:3096   AUCCGCUCCAAUCUCCUUCAA   3116

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*||||||||=|||||||
targets:3127   AUCCGCUCCAAUCUCCUUCAA   3147

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
EZ111591.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  *||||||||*|||||||||||
targets:73   UUCCUCUCCCAUCCCCUUCAA   93

1.5 TSA: Zea mays contig47252, mRNA sequence NA coding protein psRNATarget
XM_020543383.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  *|||*||=|||||||||||||
targets:231   UUCCCCUUCAAUCCCCUUCAA   251

2.0 PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA NA coding protein psRNATarget
XM_020552749.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*|||||||||||*||||
targets:3272   AUCCCCUCCAAUCCCCCUCAA   3292

2.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*|||||||||||*||||
targets:1593   AUCCCCUCCAAUCCCCCUCAA   1613

2.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
NM_001176181.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*|||||||||||*||||
targets:1593   AUCCCCUCCAAUCCCCCUCAA   1613

2.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
XM_020547439.1
ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1
  ||||*|||||||||||*||||
targets:3920   AUCCACUCCAAUCCCCCUCAA   3940

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
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