Search result

BaseInfo

ncRNA ID osa-miR1861l
Species Oryza sativa
Class miRNA
Genome position Chr9:13532426-13532554 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 23 - CGAUCUUGAGGCAGGAACUGAG - 44
Stem-loop(if miRNA)    UG  -GC      U              A           A  A  U      CUC  UCU
UCG  UU   AUAUUC UAGGCCCGAUCUUG GGCAGGAACUG GU GU GGUGAA   GC   A
|||  ||   |||||| |||||||||||||| ||||||||||| || || ||||||   ||
AGU  AA   UAUAAG GUCUGGGCUAGAAC CUGUCCUUGGC CA CG UCACUU   UG   U
   GU  ACA      U              C           A  G  C      ACU  UUG
Stem-loop sequence UCGUGUUGCAUAUUCUUAGGCCCGAUCUUGAGGCAGGAACUGAGUAGUUGGUGAACUCGCUCUAUGUUGUUCAUUCACUCGCGACACGGUUCCUGUCCCAAGAUCGGGUCUGUGAAUAUACAAAUGUGA

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).
2 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).