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BaseInfo

ncRNA ID	novel_zma_miR3589
Species	Zea mays
Class	miRNA
Genome position	Chr1:177244358-177244441 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287160;SRR2287162;SRR2287163
Length	21
Mature sequence(if miRNA)	1 - CGGAGGGAAUUGGAGGGGCUA - 21
Stem-loop(if miRNA)	--C      A         G     A        U   U  A    GGAGGG AUUGGAGGG CUAAA UCCCUUCC UAU CA A    |||||| ||||||||| ||||| |||||||| ||| ||    CCUCUC UAACCUCCC GAUUU AGGGGAGG AUA GU A UGA      C         A     A        U   U  U
Stem-loop sequence	CGGAGGGAAUUGGAGGGGCUAAAAUCCCUUCCUUAUUCAAAAUUGUAUAUGGAGGGGAAUUUAGACCCUCCAAUCCUCUCCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235519.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||||||||||||||||||||| targets:74   UAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	0.0	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
HI403389.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||||||||||||||||||||| targets:74   UAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	0.0	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
JB163850.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||||||||||||||||||||| targets:74   UAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	0.0	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   |||||||||||||*||||||| targets:3500   UAGCCCCUCCAAUCCCCUCCG   3520 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   |||||||||||||*||||||| targets:3535   UAGCCCCUCCAAUCCCCUCCG   3555 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:684   UAUCCCCUCCAAUCCCCUCCG   704 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1031   UAACCCCUCCAAUCCCCUCCG   1051 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1564   UAUCCCCUCCAAUCCCCUCCG   1584 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1584   UAUCCCCUCCAAUCCCCUCCG   1604 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1608   UAUCCCCUCCAAUCCCCUCCG   1628 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1641   UAUCCCCUCCAAUCCCCUCCG   1661 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget